NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15689.1 Public Mus musculus 2 Itga8 23 108 98 CCDS HistoryNCBI Gene:241226Re-query CCDS DB by CCDS ID:15689.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028106.10 ENSMUSP00000028106.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028106.10Link to Ensembl Protein Viewer:ENSMUSP00000028106.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028106Re-query CCDS DB by Protein ID:ENSMUSP00000028106
Original member NCBI NM_001001309.3 NP_001001309.1 Updated not alive Link to Nucleotide Sequence:NM_001001309.3Link to Protein Sequence:NP_001001309.1Re-query CCDS DB by Nucleotide ID:NM_001001309Re-query CCDS DB by Protein ID:NP_001001309
Current member NCBI NM_001001309.4 NP_001001309.1 Accepted alive Link to Nucleotide Sequence:NM_001001309.4Link to Protein Sequence:NP_001001309.1Re-query CCDS DB by Nucleotide ID:NM_001001309Re-query CCDS DB by Protein ID:NP_001001309Link to BLAST:NP_001001309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001309.1 1062 A2ARA8-1 1062 100% 0 0

Chromosomal Locations for CCDS 15689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 12109115 12109201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12110975 12111097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12119947 12120048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12132439 12132552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12140378 12140506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12155372 12155530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12160322 12160427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12174153 12174233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12178644 12178723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12182659 12182751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12189473 12189620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12191171 12191238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12191706 12191843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12193412 12193566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12194379 12194434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12200075 12200182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12204731 12204776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12230050 12230241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12232704 12232909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12242411 12242463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12245146 12245202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12247510 12247553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12250081 12250125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12253453 12253578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12255963 12256008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12257169 12257230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12262058 12262181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12265233 12265333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12300838 12300971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 12301577 12301782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3189 nt):
ATGTCTGCGGGAACCCACTGTGGTCCCCCGGGGAACCGGGCACCTCCGTTCGCGCGTCTCTGTTGCGTCT
CGGCCGCGCTGGGGATGCTGTGGTCCCCTGCGTGTCTGGCGTTCAACTTGGATGTGGACAAGCTCACTGT
GTACAGTGGCCCCGAGGGCAGCTACTTCGGCTACTCACTGGACTTCTACATACCTGATGCGCGCACAGCC
AGTGTCTTAGTGGGGGCACCCAAAGCCAACACTAGCCAGCCGGATATCGTAGAAGGGGGAGCTGTCTACT
ACTGTCCCTGGCCCTCAGAGAGGTCTGCACAGTGCAAGCAGATACCGTTTGACACCACCAACAACAGGAA
AATCAGAGTTAATGGAACCAAAGAACCTATAGAATTTAAATCAAACCAGTGGTTTGGAGCCACAGTGAGA
GCTCACAAAGGAAAAGTTGTGGCTTGTGCCCCTTTGTATCACTGGAGAACTCTGAAACCTAATCCAGCGA
AGGACCCAGTTGGCACATGCTATGTAGCAATTCAGAATTTCAGTGCCTATGCTGAGCACTCACCTTGTCG
AAACAGCAATGCTGATCCCGAAGGCCAAGGTTACTGCCAGGCAGGGTTTAGCCTAGACTTCTATAAGAAT
GGAGACCTTATAGTGGGAGGACCTGGAAGTTTTTACTGGCAAGGTCAGGTGATCACTGTCAGTATAGCAG
ACATCATTGCAAATTACTCATTCAAGGATATTCTACGAAAATTGGCCGCAGAAAAGCAGACAGACGTGGC
TCCAGCTTCCTATGATGACAGCTACCTTGGATATTCGGTCGCTGCTGGAGAATTCACTGGGGACTCTCAG
CAAGAATTGGTGGCTGGGATTCCAAGAGGAGCACAGAACTTTGGATATGTCTCCATCATTAACTCCACAG
ACATGACCTTCATTCAGAATTTTACTGGTGAGCAGATGGCATCTTATTTCGGATATACTGTTGTGGTATC
AGATGTTAACAATGATGGCATGGATGACATATTGGTCGGGGCACCTCTCTTTATGGAGCGAGAATTTGAA
AGTAACCCTAGAGAAGTGGGACAGGTCTACTTGTACCTTCAAGCAAGCGCCCTCCTCTTCCAAGACCCAC
AGGTCCTCACCGGCACGGAGACATTTGGGAGATTTGGTAGCTCTGTGGCCCACTTGGGGGACCTGAACCA
AGATGGATACAATGACATCGCCATCGGTGTGCCCTTTGCAGGCAAGGATCAACGAGGTAAAGTCCTCATT
TACAATGGAAACCCAAGAGGTTTACACAGCAAGCCTTCCCAAGTTCTGCAAGGAATATGGGGGTCACAGA
CCATCCCTTCTGGATTTGGCTTTTCTCTAAGAGGAGATGCAGACATAGACAAGAATGATTACCCAGATTT
GCTTGTAGGGGCATTTGGAAAAGGGAAAGTAGCTGTTTACAGAGCAAGGCCAGTTGTAACCGTGGATGCC
CAGCTTCTGCTGCACCCGATGATTATCAACCTTGAAAATAAAACTTGCCAGATTCCAGAATTCCCTACTC
CTGTGGCCTGCTTTTCTGTAAGAGTCTGTGCATCTATAGCAGGCCAGAGCATTTCAAATACAATAGCCCT
GCTGGCCGAGGTGCAGTTAGATTTCCTGAAGCAAAAAGGAGCCATCAAACGGACGCTCTTTCTCCACAAC
CACCAGTCCCATTTCACCTTCCCCTTTGTGATGAAGCAGCAGAAATCCCTCCACTGCCAGGATTTTATGG
TTTACCTTCGGGATGAAACTGAATTCCGAGATAAATTGTCTCCAATCAACATCAGCCTGAACTACAGTTT
GGATGATTCTACCTTTAAAGACAGCCTGGAAGTGAAGCCAATTTTGAACCACTACAGGGACAATGTAGTT
ACTGAGCAGGCTCACATCCTGGTGGACTGTGGAGAAGACAATCTATGCGTTCCTGACTTGAAGCTGTCAG
CTAGACCAGATAAGCATCAGATAATTATTGGCGATGAAAATCACCTAATGCTCATAATAAATGCAAGAAA
TGAGGGAGAAGGGGCCTACGAAGCCGAACTCTTTGTTATCATCCCCGAAGAAGCAGATTATGTTGGGATT
GAGCGCAACAACAAGGGACTGAGGCCCCTGAGTTGTGAGTACAAGATGGAAAACGTGACCAGGATGGTGG
TGTGTGACCTTGGGAACCCGATGGTGACTGGAACAAATTTTTCTCTGGGCCTCCGATTTGCTGTTCCTCG
CCTTGAGAAAACAAATATGAGCATTAACTTCGATCTCCAAATCAGAAGCTCCAATAAGGACAATCCTGAC
AGCAACTTCGAGCGTGTACAGATCAACATCACTGCCATTGCTCAGGTCGAAATCAGAGGAGTGTCCCACC
CTCCGCAGATTGTTCTGCCCATCCACAACTGGGAACCAGAAAAGAAGCCACACAAAGAGGAGGAAGTCGG
TCCTTTGGTTGAGCATATTTATGAGCTGCACAATATTGGACCCAGCACCATCAGTGACAGCATTCTTGAC
GTGGGCTGGCCGTTCTCTGCACGGGATGAGTTTCTCCTCTATATTTTTCATCTTCAAACTCTGGGACCTC
TACAATGTCAAACAAATCCTGAGATCAACCCACAGGATATAAAGCCTGCTGCCTCCCCAGAGGATACCCC
TGAGCTCAGTGCCTTCTTAAGAAATGCTACAATTCCCCATCTTGTCAGAAAGAGGGATGTGCCAGTGGTC
CAGCTCCACAGACAGAGCCCTGCAAGAATACTGAACTGTACCAACATTGACTGCTTGCAAATCTCTTGTG
CAGTGGGTCGCCTGGGAGGAGGCGAAAGTGCAGTCCTAAAGGTCAGATCGAGATTGTGGGCCCACACGTT
CCTCAAGAGAAAGAATGATCATTATGCTCTTGCATCCCTGGTGTCCTTTGAAGTCAAGAAGATGCCGTAT
AAAGAACAGCCAGCAAAGCTGCCAGCGGGGAGCACAGCGGTTAAGACGTCGGTTATTTGGGCCACTCCGA
ATGTCTCCTTCTCAATTCCATTGTGGGTCATAATACTAGCGATCCTTCTTGGTTTGCTGGTTCTGGCTAT
CTTAACTTTAGCTTTATGGAAGTGTGGATTCTTTGATAGAGCAAGACCTCCTCAGGATGAAATGACAGAC
AGGGAACAACTGACCAGTGACAAGACCCCAGAGGCGTGA

Translation (1062 aa):
MSAGTHCGPPGNRAPPFARLCCVSAALGMLWSPACLAFNLDVDKLTVYSGPEGSYFGYSLDFYIPDARTA
SVLVGAPKANTSQPDIVEGGAVYYCPWPSERSAQCKQIPFDTTNNRKIRVNGTKEPIEFKSNQWFGATVR
AHKGKVVACAPLYHWRTLKPNPAKDPVGTCYVAIQNFSAYAEHSPCRNSNADPEGQGYCQAGFSLDFYKN
GDLIVGGPGSFYWQGQVITVSIADIIANYSFKDILRKLAAEKQTDVAPASYDDSYLGYSVAAGEFTGDSQ
QELVAGIPRGAQNFGYVSIINSTDMTFIQNFTGEQMASYFGYTVVVSDVNNDGMDDILVGAPLFMEREFE
SNPREVGQVYLYLQASALLFQDPQVLTGTETFGRFGSSVAHLGDLNQDGYNDIAIGVPFAGKDQRGKVLI
YNGNPRGLHSKPSQVLQGIWGSQTIPSGFGFSLRGDADIDKNDYPDLLVGAFGKGKVAVYRARPVVTVDA
QLLLHPMIINLENKTCQIPEFPTPVACFSVRVCASIAGQSISNTIALLAEVQLDFLKQKGAIKRTLFLHN
HQSHFTFPFVMKQQKSLHCQDFMVYLRDETEFRDKLSPINISLNYSLDDSTFKDSLEVKPILNHYRDNVV
TEQAHILVDCGEDNLCVPDLKLSARPDKHQIIIGDENHLMLIINARNEGEGAYEAELFVIIPEEADYVGI
ERNNKGLRPLSCEYKMENVTRMVVCDLGNPMVTGTNFSLGLRFAVPRLEKTNMSINFDLQIRSSNKDNPD
SNFERVQINITAIAQVEIRGVSHPPQIVLPIHNWEPEKKPHKEEEVGPLVEHIYELHNIGPSTISDSILD
VGWPFSARDEFLLYIFHLQTLGPLQCQTNPEINPQDIKPAASPEDTPELSAFLRNATIPHLVRKRDVPVV
QLHRQSPARILNCTNIDCLQISCAVGRLGGGESAVLKVRSRLWAHTFLKRKNDHYALASLVSFEVKKMPY
KEQPAKLPAGSTAVKTSVIWATPNVSFSIPLWVIILAILLGLLVLAILTLALWKCGFFDRARPPQDEMTD
REQLTSDKTPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH