NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15836.1 Public Mus musculus 2 Ppp1r26 23 108 98 CCDS HistoryNCBI Gene:241289Re-query CCDS DB by CCDS ID:15836.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040324.13 ENSMUSP00000042173.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040324.13Link to Ensembl Protein Viewer:ENSMUSP00000042173.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040324Re-query CCDS DB by Protein ID:ENSMUSP00000042173
Original member Current member EBI ENSMUST00000189694.1 ENSMUSP00000139546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189694.1Link to Ensembl Protein Viewer:ENSMUSP00000139546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189694Re-query CCDS DB by Protein ID:ENSMUSP00000139546
Original member NCBI NM_001005420.2 NP_001005420.1 Updated not alive Link to Nucleotide Sequence:NM_001005420.2Link to Protein Sequence:NP_001005420.1Re-query CCDS DB by Nucleotide ID:NM_001005420Re-query CCDS DB by Protein ID:NP_001005420
Current member NCBI NM_001005420.3 NP_001005420.1 Accepted alive Link to Nucleotide Sequence:NM_001005420.3Link to Protein Sequence:NP_001005420.1Re-query CCDS DB by Nucleotide ID:NM_001005420Re-query CCDS DB by Protein ID:NP_001005420Link to BLAST:NP_001005420.1
Original member NCBI NM_001368159.1 NP_001355088.1 Updated not alive Link to Nucleotide Sequence:NM_001368159.1Link to Protein Sequence:NP_001355088.1Re-query CCDS DB by Nucleotide ID:NM_001368159Re-query CCDS DB by Protein ID:NP_001355088
Current member NCBI NM_001368159.2 NP_001355088.1 Accepted alive Link to Nucleotide Sequence:NM_001368159.2Link to Protein Sequence:NP_001355088.1Re-query CCDS DB by Nucleotide ID:NM_001368159Re-query CCDS DB by Protein ID:NP_001355088Link to BLAST:NP_001355088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005420.1 1163 Q6A025 1163 100% 0 0
NP_001355088.1 1163 Q6A025 1163 100% 0 0

Chromosomal Locations for CCDS 15836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 28450360 28453851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3492 nt):
ATGTTCCTCATGAACGCCCCTCCAGTGGTGGCGCTCCAGTCCAGATGGGAGGCCTTTGGGCAGCCCAGGA
GCTTCTGCCTCCCAGACTGCTTCTCTGAGGCTAAAGAGGACGGCTCCAGGGCTTCCGTGAGCGCCAGGGT
CCAGATGCTCATCAGCACGCTTCAGAGGGACGAGGCTGCCCTGGGCATGGGCCATGAGCGTCTCACCCAA
AGAGGCCAACGTGCAGAGAGGTCCCGGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGC
CAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAGATGAAGCTGGGAGACGCAG
TCCCTTGGAGCTGGATTCTGACAGTGATGACTCCGTGGACCGAGACATTGAGGAAGCTATCCAAGAGTAC
CTGAAGGCAAGGGGTGGGGCTTCTGAACCTATGTCCCAAGGGGCCCCCTCTATCCCCGAGCCTGCCCACA
GCAGCACCTTGCCCATCCCGTGTCCCTCACAGCTCACTCCCGGCTCAGGTAGTGTTCCTGTGGGAGCCAG
TGAAGATCAGGGCTCCACCTCCCCAGCGAGCATGAGCAGCGAGGACTCCTTTGAACAGAGCATCCGAGCT
GAAATAGAACAGTTTCTTAATGAGAAAAGACAGCATGAAAACCCGAAGTGTGATGGGTTTGTGGATAAAA
AATCCGACCCAAACAACAGCCCTGCCAGACTTAGAGGGAACCGAGAAACCTCAGCCAGGGCAGCTCTGAT
GGGAACGTGTAAGGAGTTCATCTTCCGAAAACCTCCCAGGTTAACAAAGATGAGCACACAGCAGAGAAAC
TTCCAGCCTAAGCCCACCACAGAGCCTGAGACCCCAGTGAGCACGAAGCTGACCGCCCACAGACCGGAGG
CTGCACAGAGCAGGGGTGGGGTGAGGAGGAGCATGCCTGCCAGGCGCAGCAAGCGCATCAGGAGCTCGGC
CCCAGTGCACCAGGCATCAGACTCCAGCAGTGACGACGGCATTGAGGAGGCCATCCAGCTATACCAGCTA
GAGAAAACCAGGAAGGAGGCCAGTGGGGACCCACCTCTGAGAGGCCAGCTGAAAGAGGAAAGCCCTGGTA
GTGCCCAGCCAAACGCCTTGCCTGAAGCCCACAGGAGACCCCCTAGCAAGAAAAAGCTGGCTGTTCCCAA
GGTTATAGACACCACCCAGGGGGTCCTCCACCCTGATCCCCTCTCCAGGCTCCTGACGGATTCGAGAGCC
TCTTTACCTCCAGGACACGCAGCTGCCAAGAGTGAAGCTGTGTGCCAGGCCTCACGCCTAGCAGACACAT
CTACCGAACTGATGTGTGCAGAAGCGATCCTGGACATCTCCAAGACCATTCTGCCAGCCCCCATGGAAGG
CAGCGACAGGCCTCCATCCAGGAACCCACTCTTCTGTCCCCAACCCATGCCTCCCCGTTCTGAAGGTGAC
AGCAGCAACATTGACAGTGATGATAGCATCGAGCAAGAGATCCGAACGTTTTTGGCTCTCAAGGCACAAG
TAGGGAGTCCTCAGCCTGCCCAGGGTCCACTGTCTTCGCCTGGCCCCAGTGGCCAGCCTGGCATCCCCAA
GGTCCCTTTTGCTAAAACACTAGATCTCCCTCTGGTCTGCAAACGGAAACGGAGAGGTGGAGGAGGCAGC
ACTACAATGCCCAAGAAAATAAGGGAGGGTAGAGAAAGTACCCAGGACGCTGACCACATCCAGGGGAAAG
CTCAGCCTGGCCATGACGGGTGGGACCCTCTCGGGCACAACAAAATCACAGAGACCCCAGGAGGAGAGGC
TGAAGCCAAGGAACAGCCTGTCATTTCCAGGACAGTTGGGCTCAGTGATACACACCTACCACAAGGGGCC
CTCGGGAAGGCCACTGAGAAGGAAAGCTCTGAGGATAAGAGCAGTTCTCTGGACAGTGACGAGGACCTGG
ACATGGCCATCAAGGACTTGCTAAGATCCAAGCGCAAGTTTAAGAAGAGGTGCCGAGACCCACGGGCTTC
CTGTAAGAAGGTCAGATTTGGCAGCACAGAGACTCGGTGTGGGGAGAAGCCGAGCAACCTTCCAGGGGAC
TGGAAAGACCACAGACAGCAGGCACTACGGAGCTGTCTGCCCAAGTGCAGAGGGGACAATAAAGATGGCC
CAGGACGAAGCCCAGGAAGCAGTGTGGCAGAGAAGGCAAAGATGGGTGGCACAGGGGGCGAGGACGCAAC
CCCTGCCTTTCTCCTCAGGAGGAAAAGTCCAGAAGGGGCTCTTCCCTCTACAGACACAGGAGCCAGTGGC
CACCCTCCTTCAGCCTCCAGCCCCACATCTGAGGACAGTGCAGTGGACAGTGATGACAGCATCGAGCTGG
AGATCAGGAGGTTTTTGGCAGAGAAGGCCAAGGAGTCTATACGCAACACAGAACCTCAAGGGGGACCTGC
CAAGCCAGAGATGCCCTGTAGGAAAGACCCAACCCTGGGGTTGCAGCCTGGAGTGTGCACACGGAGCCAA
AAAGCCAGGGGAACCCCTCAGCTGGCCGAAGGAAGGAGAGGCCCAGAGAGAGCTCGGACACAGGCAACCG
GCCTCTTGAGCCAGTCTGGGAAGGGCACCCTCCGTGCTGAGCAGACCGCCCGCCTCACCACTGCCCTGGG
CCGAAGTGAGCCAGCACTACCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGG
AAAAGTGCTCACGTTCACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCG
GTCAGCTGCCCAGTTGTGCCAAAGTGGGTGCCGAGGCTGGAAGCGCCGGGGGTACCTTTCACCTGAACTA
TGGCAGTCAGAACTTGCTAACCCCCAACCCTGGGTCCCAGGCTGACCTCGTCCTTCCTTGGAGTGACTTT
GCACACCAGAGCAGGCTATCCAGCCCATGGGTGCTGAACTCGGGTCAAGGCACAGTGTGGACAGGGGTCT
TTAGGGGTGAGAAGGAAAAAGGGGCTACATCACAGGCTGGGGCCCCACCCAGCCTCTCCTCAGGCCCCAG
GAAGGGCCTGCCTTTCCTCTCCACCCAGCTCTTCCACTTTGGGAAGAATGTTTCTTGGGGGGGCAAGCAG
ACCAGCCTCTTCAGCCCCAATCTAGGCTTACCTCTGCAGGCTCCCGCATTCTCAGCCTTCAGGGAGACCC
AGCCTGGCCACAACCCTGTATTTGGAAGCCCACACTTGCTAATGAAAGACAGTGGGAACTGGCCAAGCCG
GAAGGCTCAGGGGACCCTGAGACAACAGGACAGGAGGAATTCTGCCTCTGAGGACAAAGTTCTAGACCTG
AGATATCGGCACAGGGTTGACAGGGAACCGCAGGACCAGGAGACCTTGGGCAGTGATGCCAGCGAATTCA
GTGACACTTCCATGGAGGATGGGGGCAGTGCCACAGTGAGCAGTAAAGGCCTCAAGTTGTGA

Translation (1163 aa):
MFLMNAPPVVALQSRWEAFGQPRSFCLPDCFSEAKEDGSRASVSARVQMLISTLQRDEAALGMGHERLTQ
RGQRAERSRDTRLAPKPAVCKEQPEFPARGLVANCSALEKDEAGRRSPLELDSDSDDSVDRDIEEAIQEY
LKARGGASEPMSQGAPSIPEPAHSSTLPIPCPSQLTPGSGSVPVGASEDQGSTSPASMSSEDSFEQSIRA
EIEQFLNEKRQHENPKCDGFVDKKSDPNNSPARLRGNRETSARAALMGTCKEFIFRKPPRLTKMSTQQRN
FQPKPTTEPETPVSTKLTAHRPEAAQSRGGVRRSMPARRSKRIRSSAPVHQASDSSSDDGIEEAIQLYQL
EKTRKEASGDPPLRGQLKEESPGSAQPNALPEAHRRPPSKKKLAVPKVIDTTQGVLHPDPLSRLLTDSRA
SLPPGHAAAKSEAVCQASRLADTSTELMCAEAILDISKTILPAPMEGSDRPPSRNPLFCPQPMPPRSEGD
SSNIDSDDSIEQEIRTFLALKAQVGSPQPAQGPLSSPGPSGQPGIPKVPFAKTLDLPLVCKRKRRGGGGS
TTMPKKIREGRESTQDADHIQGKAQPGHDGWDPLGHNKITETPGGEAEAKEQPVISRTVGLSDTHLPQGA
LGKATEKESSEDKSSSLDSDEDLDMAIKDLLRSKRKFKKRCRDPRASCKKVRFGSTETRCGEKPSNLPGD
WKDHRQQALRSCLPKCRGDNKDGPGRSPGSSVAEKAKMGGTGGEDATPAFLLRRKSPEGALPSTDTGASG
HPPSASSPTSEDSAVDSDDSIELEIRRFLAEKAKESIRNTEPQGGPAKPEMPCRKDPTLGLQPGVCTRSQ
KARGTPQLAEGRRGPERARTQATGLLSQSGKGTLRAEQTARLTTALGRSEPALPKNTCRNSSAKASPPSR
KSAHVHKDHSPQGSQTATAESVFGQLPSCAKVGAEAGSAGGTFHLNYGSQNLLTPNPGSQADLVLPWSDF
AHQSRLSSPWVLNSGQGTVWTGVFRGEKEKGATSQAGAPPSLSSGPRKGLPFLSTQLFHFGKNVSWGGKQ
TSLFSPNLGLPLQAPAFSAFRETQPGHNPVFGSPHLLMKDSGNWPSRKAQGTLRQQDRRNSASEDKVLDL
RYRHRVDREPQDQETLGSDASEFSDTSMEDGGSATVSSKGLKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH