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Report for CCDS13838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13838.1 Public Homo sapiens 22 TFIP11 24 110 108 CCDS HistoryNCBI Gene:24144Re-query CCDS DB by CCDS ID:13838.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13838.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407431.5 ENSP00000383892.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407431.5Link to Ensembl Protein Viewer:ENSP00000383892.1Re-query CCDS DB by Nucleotide ID:ENST00000407431Re-query CCDS DB by Protein ID:ENSP00000383892
Original member Current member EBI ENST00000405938.5 ENSP00000384297.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405938.5Link to Ensembl Protein Viewer:ENSP00000384297.1Re-query CCDS DB by Nucleotide ID:ENST00000405938Re-query CCDS DB by Protein ID:ENSP00000384297
Original member Current member EBI ENST00000407690.6 ENSP00000384421.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000407690.6Link to Ensembl Protein Viewer:ENSP00000384421.1Re-query CCDS DB by Nucleotide ID:ENST00000407690Re-query CCDS DB by Protein ID:ENSP00000384421
Original member Current member EBI ENST00000407148.5 ENSP00000385861.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407148.5Link to Ensembl Protein Viewer:ENSP00000385861.1Re-query CCDS DB by Nucleotide ID:ENST00000407148Re-query CCDS DB by Protein ID:ENSP00000385861
Original member Current member EBI ENST00000619735.4 ENSP00000480171.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619735.4Link to Ensembl Protein Viewer:ENSP00000480171.1Re-query CCDS DB by Nucleotide ID:ENST00000619735Re-query CCDS DB by Protein ID:ENSP00000480171
Original member Current member NCBI NM_001008697.3 NP_001008697.1 Accepted alive Link to Nucleotide Sequence:NM_001008697.3Link to Protein Sequence:NP_001008697.1Re-query CCDS DB by Nucleotide ID:NM_001008697Re-query CCDS DB by Protein ID:NP_001008697Link to BLAST:NP_001008697.1
Original member Current member NCBI NM_001346857.2 NP_001333786.1 Accepted alive Link to Nucleotide Sequence:NM_001346857.2Link to Protein Sequence:NP_001333786.1Re-query CCDS DB by Nucleotide ID:NM_001346857Re-query CCDS DB by Protein ID:NP_001333786Link to BLAST:NP_001333786.1
Original member Current member NCBI NM_001346858.2 NP_001333787.1 Accepted alive Link to Nucleotide Sequence:NM_001346858.2Link to Protein Sequence:NP_001333787.1Re-query CCDS DB by Nucleotide ID:NM_001346858Re-query CCDS DB by Protein ID:NP_001333787Link to BLAST:NP_001333787.1
Original member Current member NCBI NM_001346859.2 NP_001333788.1 Accepted alive Link to Nucleotide Sequence:NM_001346859.2Link to Protein Sequence:NP_001333788.1Re-query CCDS DB by Nucleotide ID:NM_001346859Re-query CCDS DB by Protein ID:NP_001333788Link to BLAST:NP_001333788.1
Original member Current member NCBI NM_001346861.2 NP_001333790.1 Accepted alive Link to Nucleotide Sequence:NM_001346861.2Link to Protein Sequence:NP_001333790.1Re-query CCDS DB by Nucleotide ID:NM_001346861Re-query CCDS DB by Protein ID:NP_001333790Link to BLAST:NP_001333790.1
Original member Current member NCBI NM_012143.4 NP_036275.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012143.4Link to Protein Sequence:NP_036275.1Re-query CCDS DB by Nucleotide ID:NM_012143Re-query CCDS DB by Protein ID:NP_036275Link to BLAST:NP_036275.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008697.1 837 Q9UBB9-1 837 100% 0 0
NP_001333786.1 837 Q9UBB9-1 837 100% 0 0
NP_001333787.1 837 Q9UBB9-1 837 100% 0 0
NP_001333788.1 837 Q9UBB9-1 837 100% 0 0
NP_001333790.1 837 Q9UBB9-1 837 100% 0 0
NP_036275.1 837 Q9UBB9-1 837 100% 0 0

Chromosomal Locations for CCDS 13838.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 26492013 26492368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26494139 26494304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26494797 26494939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26496073 26496316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26496721 26496889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26498869 26498975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26499104 26499631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26501900 26502052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26503666 26503793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26506303 26506459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26506775 26506928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 26510064 26510272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGTCATTGTCCCACTTATACCGGGATGGGGAAGGCCGCATTGATGATGATGATGACGAGCGGGAGAACT
TTGAGATCACTGACTGGGATCTCCAGAATGAGTTCAACCCCAACCGACAGCGCCACTGGCAGACCAAGGA
AGAAGCCACCTACGGGGTGTGGGCAGAGCGAGACTCGGATGATGAGAGGCCCAGCTTTGGAGGCAAACGG
GCCCGTGACTACTCTGCGCCAGTCAACTTCATCAGCGCAGGGCTCAAGAAAGGGGCAGCGGAGGAGGCAG
AGTTGGAAGATTCTGATGACGAAGAGAAACCTGTTAAGCAGGACGACTTTCCTAAGGATTTTGGACCAAG
GAAGCTAAAAACGGGTGGCAATTTTAAGCCCAGCCAGAAAGGTTTTGCAGGAGGAACCAAATCTTTCATG
GACTTCGGCAGCTGGGAAAGACACACAAAAGGAATTGGACAGAAGCTTCTTCAGAAGATGGGCTACGTCC
CTGGACGGGGCCTCGGGAAGAATGCACAAGGTATCATTAACCCAATTGAAGCCAAGCAGAGAAAGGGAAA
AGGTGCTGTGGGGGCTTATGGATCCGAGCGCACCACTCAGTCCATGCAAGACTTCCCTGTGGTTGACTCA
GAGGAAGAAGCTGAAGAGGAGTTTCAGAAGGAGCTGAGCCAGTGGAGGAAAGACCCAAGTGGAAGCAAGA
AGAAGCCCAAATACTCTTACAAGACCGTGGAAGAGTTGAAGGCCAAGGGCAGGATTAGCAAGAAGCTCAC
TGCTCCCCAGAAGGAACTTTCTCAAGTCAAGGTCATAGACATGACAGGCCGGGAGCAGAAGGTCTACTAC
AGCTACAGTCAGATCAGCCACAAGCACAACGTTCCCGATGATGGGCTGCCGCTACAGTCCCAACAGCTGC
CACAGTCTGGCAAAGAGGCCAAGGCCCCCGGCTTCGCGCTGCCCGAGCTGGAGCACAACCTGCAGCTGCT
CATCGACCTCACGGAGCAGGAGATCATCCAGAATGACCGGCAGCTACAGTATGAGCGGGACATGGTGGTC
AACCTCTTCCACGAGCTGGAGAAGATGACCGAGGTCCTGGACCACGAGGAGCGGGTCATCTCGAACCTCA
GCAAGGTCCTGGAGATGGTGGAGGAGTGCGAGCGGCGGATGCAGCCCGACTGCAGCAACCCCCTCACCCT
GGACGAGTGTGCCCGCATCTTCGAAACCCTGCAGGACAAGTACTATGAGGAGTACAGGATGTCCGACCGT
GTGGACCTTGCTGTGGCCATCGTCTATCCACTCATGAAGGAGTACTTCAAGGAGTGGGATCCCCTCAAAG
ACTGCACTTATGGCACCGAGATCATCTCTAAGTGGAAAAGCCTCCTAGAGAATGACCAGCTCTTGTCCCA
TGGCGGACAGGACCTCTCAGCAGATGCCTTTCACAGGTTGATATGGGAAGTCTGGATGCCTTTTGTTCGA
AATATTGTCACCCAGTGGCAGCCAAGGAACTGTGACCCGATGGTGGACTTTTTGGATAGTTGGGTGCACA
TTATTCCTGTGTGGATCTTAGATAACATACTGGACCAACTCATCTTCCCCAAGCTGCAAAAGGAGGTGGA
AAACTGGAACCCGCTCACAGACACTGTTCCCATCCACTCTTGGATCCACCCATGGCTGCCCCTTATGCAG
GCACGGCTGGAGCCACTCTATTCCCCCATCCGTAGTAAGCTGTCCAGCGCCCTGCAGAAGTGGCACCCCA
GCGACTCCTCTGCCAAGCTCATCCTCCAGCCCTGGAAGGATGTCTTCACTCCTGGCTCCTGGGAAGCATT
CATGGTCAAAAACATAGTGCCCAAGCTGGGGATGTGTCTTGGTGAGCTAGTCATTAACCCCCACCAGCAG
CACATGGATGCATTCTATTGGGTGATTGACTGGGAAGGGATGATCTCTGTCTCTAGCCTGGTGGGACTTC
TTGAAAAGCACTTCTTCCCCAAGTGGCTTCAGGTGCTGTGCTCTTGGCTCAGTAACAGCCCAAATTATGA
GGAGATCACCAAGTGGTACCTGGGTTGGAAGTCGATGTTCTCAGACCAAGTGCTGGCACATCCATCTGTC
AAGGACAAATTTAATGAGGCACTTGATATCATGAACCGGGCGGTGTCCTCCAACGTTGGTGCCTACATGC
AGCCAGGAGCACGGGAGAACATTGCCTATCTCACCCACACGGAGCGGAGGAAGGACTTCCAGTACGAGGC
CATGCAGGAGAGGCGGGAGGCTGAGAACATGGCTCAGAGGGGCATTGGCGTGGCCGCTAGCTCTGTGCCC
ATGAACTTTAAGGACCTCATTGAGACCAAGGCTGAGGAGCACAACATTGTCTTCATGCCCGTCATTGGGA
AGCGACACGAAGGGAAGCAGCTCTACACCTTTGGCCGCATTGTGATCTACATCGACCGGGGAGTGGTCTT
TGTCCAGGGCGAGAAGACGTGGGTGCCCACCTCACTGCAGAGCCTGATCGACATGGCCAAGTGA

Translation (837 aa):
MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSDDERPSFGGKR
ARDYSAPVNFISAGLKKGAAEEAELEDSDDEEKPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFM
DFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSERTTQSMQDFPVVDS
EEEAEEEFQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQKVYY
SYSQISHKHNVPDDGLPLQSQQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQEIIQNDRQLQYERDMVV
NLFHELEKMTEVLDHEERVISNLSKVLEMVEECERRMQPDCSNPLTLDECARIFETLQDKYYEEYRMSDR
VDLAVAIVYPLMKEYFKEWDPLKDCTYGTEIISKWKSLLENDQLLSHGGQDLSADAFHRLIWEVWMPFVR
NIVTQWQPRNCDPMVDFLDSWVHIIPVWILDNILDQLIFPKLQKEVENWNPLTDTVPIHSWIHPWLPLMQ
ARLEPLYSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFTPGSWEAFMVKNIVPKLGMCLGELVINPHQQ
HMDAFYWVIDWEGMISVSSLVGLLEKHFFPKWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSV
KDKFNEALDIMNRAVSSNVGAYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVP
MNFKDLIETKAEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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