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Report for CCDS38152.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38152.1 Public Mus musculus 2 Pde11a 23 108 98 CCDS HistoryNCBI Gene:241489Re-query CCDS DB by CCDS ID:38152.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38152.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099992.9 ENSMUSP00000097572.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099992.9Link to Ensembl Protein Viewer:ENSMUSP00000097572.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099992Re-query CCDS DB by Protein ID:ENSMUSP00000097572
Original member NCBI NM_001081033.2 NP_001074502.1 Updated not alive Link to Nucleotide Sequence:NM_001081033.2Link to Protein Sequence:NP_001074502.1Re-query CCDS DB by Nucleotide ID:NM_001081033Re-query CCDS DB by Protein ID:NP_001074502
Current member NCBI NM_001081033.3 NP_001074502.1 Accepted alive Link to Nucleotide Sequence:NM_001081033.3Link to Protein Sequence:NP_001074502.1Re-query CCDS DB by Nucleotide ID:NM_001081033Re-query CCDS DB by Protein ID:NP_001074502Link to BLAST:NP_001074502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074502.1 933 P0C1Q2 933 100% 0 0

Chromosomal Locations for CCDS 38152.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 75991132 75991287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76017836 76017919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76022711 76022785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76029277 76029340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76030924 76031001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76046779 76046879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76050140 76050230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76058976 76059085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76075353 76075460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76075937 76076083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76113504 76113554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76136367 76136459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76137339 76137406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76139835 76139910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76158296 76158428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76194889 76194953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76211023 76211163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76215318 76215407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76291165 76291323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 76337696 76338607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2802 nt):
ATGGCAGCCTCCCGCCTGGACTTCGGGGAGGTGGAAACTTTCCTGGATAGGCACCCAGAGTTGTTTGAAG
ATTACTTGATGCGAAAAGGAAAACAGGAACTGGTGGACAAGTGGCTACAAAGGCACACTTCTGGACAGGG
GGCTTCAAGCCTGAGGCCTGCCCTGGCTGGCGCTAGCAGCTTGGCTCAGAGCAATGCTAAAGGCAGCCCT
GGCATAGGTGGTGGTGCTGGACCCCAGGGCTCTGCCCACAGCCATCCCACGCCCGGTGGTGGGGAAAGTG
CTGGGGTTCCCTTGAGTCCCAGTTGGGCCAGTGGCAGCCGGGGTGATGGCAGCCTGCAGCGGAGAGCTTC
GCAGAAAGAGCTGAGGAAGAGCTTTGCCCGCTCCAAAGCCATCCATGTGAACAGGACCTACGATGAACAG
GTGACCTCCCGGGCCCAGGAGCCCCTGAGCAGTGTCCGGAGGAGAGCCCTGCTCAGAAAGGCCAGCTCTC
TGCCCCCCACCACAGCTCACATTCTAAGTGCCCTGCTGGAATCGAGGGTGAATCTGCCTCAGTATCCCCC
TACGGCCATCGACTACAAATGCCACCTCAAAAAGCATAACGAGCGCCAGTTTTTCCTGGAACTGGTCAAG
GACATCTCCAATGACCTTGACCTCACCAGCCTAAGCTACAAGATCCTCATCTTTGTCTGTCTCATGGTGG
ACGCTGACCGTTGCTCTCTCTTCTTAGTGGAAGGGGCAGCTGCTGGCAAGAAGACGTTGGTCTCCAAGTT
TTTTGATGTGCACGCAGGAACCCCACTGCTCCCCTGCAGTAGCACAGAGAACTCAAATGAGGTGCAAGTC
CCCTGGGGCAAAGGTATCATTGGCTATGTCGGGGAACACGGAGAAACTGTTAACATCCCGGATGCCTACC
AGGACCGAAGATTCAATGATGAAATTGACAAGCTGACTGGATACAAGACAAAATCACTATTGTGCATGCC
CATTCGGAACAGCGACGGGGAGATTATCGGTGTGGCCCAGGCGATAAATAAGGTCCCTGAGGGTGCTCCA
TTTACAGAAGATGACGAAAAAGTTATGCAAATGTATCTTCCGTTCTGTGGAATCGCCATATCTAATGCTC
AGCTCTTCGCTGCCTCAAGGAAAGAATACGAAAGAAGCAGGGCCCTGCTGGAGGTGGTCAATGACCTCTT
TGAAGAACAGACTGATCTGGAAAAGATTGTCAAGAAAATAATGCATCGGGCCCAAACTCTGCTGAAATGT
GAACGCTGTTCCGTCTTACTTCTAGAAGACATTGAGTCCCCAGTGGTGAAGTTTACCAAATCCTTTGAAC
TGATGTCCCCAAAGTGCAGCGCTGATGCTGAGAACAGTTTCAAAGAGAGTGTGGAGAAATCGTCTTACTC
TGACTGGCTGATAAACAACAGCATCGCTGAGCTGGTTGCTTCGACAGGCCTTCCTGTGAATGTCAGCGAT
GCCTACCAGGACCCACGCTTTGACGCTGAGGCTGACCAGATATCTGGTTTTCATATAAGATCTGTTCTCT
GTGTCCCCATTTGGAACAGCAACCACCAAATAATTGGGGTGGCTCAAGTGTTGAACAGACTCGACGGAAA
ACCTTTTGATGATGCAGACCAAAGGCTTTTTGAGGCCTTTGTCATCTTTTGTGGCCTTGGTATTAACAAC
ACAATTATGTACGATCAAGTGAAGAAGTCCTGGGCCAAGCAGTCTGTGGCCCTTGATGTGCTGTCGTACC
ACGCCACGTGTTCCAAGGCTGAAGTCGACAAGTTTAAGGCAGCCAACATCCCTCTGGTGTCGGAACTGGC
CATCGATGACATCCATTTCGATGACTTTTCCCTTGATGTTGATGCCATGATCACAGCCGCTCTACGGATG
TTCATGGAGCTGGGGATGGTACAGAAATTTAAAATCGACTATGAGACCCTGTGCAGGTGGCTTCTGACGG
TAAGGAAAAACTATCGGATGGTTCTCTACCACAACTGGAGACATGCCTTCAACGTGTGCCAACTGATGTT
TGCCATGCTAACTACTGCTGGGTTCCAAGAGATTCTGACCGAGGTGGAAATTTTAGCGGTGATTGTGGGA
TGCCTGTGTCATGACCTCGACCACAGGGGAACCAACAATGCCTTCCAAGCTAAGAGTGACTCTGCACTGG
CCCAGCTCTACGGGACCTCGGCGACCTTGGAGCATCACCATTTTAACCATGCTGTGATGATCCTTCAGAG
TGAGGGTCACAACATCTTTGCTAATTTGTCCTCCAAGGAATACAGTGACCTCATGCAGCTCCTGAAGCAG
TCAATATTAGCCACAGACCTCACGCTCTACTTTGAGAGAAGAACTGAGTTCTTCGAGCTTGTCAGGAAAG
GAGACTACGATTGGAGCATCACAAGCCACCGAGATGTGTTCCGATCAATGTTAATGACAGCCTGTGACCT
TGGAGCCGTGACCAAACCGTGGGAGATCTCCAGACAGGTGGCTGAACTTGTAACCAGCGAGTTCTTTGAA
CAAGGAGATCGGGAGAGGTCGGAACTCAAGCTCACTCCCTCTGCTATTTTTGACCGGAACCGGAAAGATG
AACTGCCTCGGTTGCAGCTGGAGTGGATTGATAGCATCTGCATGCCTTTGTATCAGGCCTTGGTGAAGGT
CAATGCAAAACTGAAACCAATGCTGGATTCAGTGGCTGCCAACCGAAGGAAGTGGGAAGAGTTGCACCAA
AAAAGACTACAGGTCTCGGCTGCCTCCCCAGACCCTGCCAGTCCCATGGTGGCCGGGGAAGACAGACTGT
AA

Translation (933 aa):
MAASRLDFGEVETFLDRHPELFEDYLMRKGKQELVDKWLQRHTSGQGASSLRPALAGASSLAQSNAKGSP
GIGGGAGPQGSAHSHPTPGGGESAGVPLSPSWASGSRGDGSLQRRASQKELRKSFARSKAIHVNRTYDEQ
VTSRAQEPLSSVRRRALLRKASSLPPTTAHILSALLESRVNLPQYPPTAIDYKCHLKKHNERQFFLELVK
DISNDLDLTSLSYKILIFVCLMVDADRCSLFLVEGAAAGKKTLVSKFFDVHAGTPLLPCSSTENSNEVQV
PWGKGIIGYVGEHGETVNIPDAYQDRRFNDEIDKLTGYKTKSLLCMPIRNSDGEIIGVAQAINKVPEGAP
FTEDDEKVMQMYLPFCGIAISNAQLFAASRKEYERSRALLEVVNDLFEEQTDLEKIVKKIMHRAQTLLKC
ERCSVLLLEDIESPVVKFTKSFELMSPKCSADAENSFKESVEKSSYSDWLINNSIAELVASTGLPVNVSD
AYQDPRFDAEADQISGFHIRSVLCVPIWNSNHQIIGVAQVLNRLDGKPFDDADQRLFEAFVIFCGLGINN
TIMYDQVKKSWAKQSVALDVLSYHATCSKAEVDKFKAANIPLVSELAIDDIHFDDFSLDVDAMITAALRM
FMELGMVQKFKIDYETLCRWLLTVRKNYRMVLYHNWRHAFNVCQLMFAMLTTAGFQEILTEVEILAVIVG
CLCHDLDHRGTNNAFQAKSDSALAQLYGTSATLEHHHFNHAVMILQSEGHNIFANLSSKEYSDLMQLLKQ
SILATDLTLYFERRTEFFELVRKGDYDWSITSHRDVFRSMLMTACDLGAVTKPWEISRQVAELVTSEFFE
QGDRERSELKLTPSAIFDRNRKDELPRLQLEWIDSICMPLYQALVKVNAKLKPMLDSVAANRRKWEELHQ
KRLQVSAASPDPASPMVAGEDRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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