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Report for CCDS79844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79844.1 Public Mus musculus 2 Spdye4c 23 108 98 CCDS HistoryNCBI Gene:241634Re-query CCDS DB by CCDS ID:79844.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178601.3 ENSMUSP00000135991.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178601.3Link to Ensembl Protein Viewer:ENSMUSP00000135991.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000178601Re-query CCDS DB by Protein ID:ENSMUSP00000135991
Original member Current member EBI ENSMUST00000144559.7 ENSMUSP00000140478.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144559.7Link to Ensembl Protein Viewer:ENSMUSP00000140478.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144559Re-query CCDS DB by Protein ID:ENSMUSP00000140478
Original member Current member NCBI NM_001310641.1 NP_001297570.1 Accepted alive Link to Nucleotide Sequence:NM_001310641.1Link to Protein Sequence:NP_001297570.1Re-query CCDS DB by Nucleotide ID:NM_001310641Re-query CCDS DB by Protein ID:NP_001297570Link to BLAST:NP_001297570.1

Chromosomal Locations for CCDS 79844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 128592341 128592431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128592596 128592703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128592885 128593001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128593837 128593953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128594119 128594325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128595693 128595751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128596041 128596126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128596509 128596683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 128596784 128596843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGTCCACACCAGTTGCCTCAGATACCACACCACGGCTTCAGAAGCCAACGAAAGGTCAAAAGAAAAAAG
TGCCTGTGAAAGCAACGATAGCTTCAGACAGAAGATCCGAGATGTCACCTGTCTCCTCAAAGGAGTCCTG
CAAGCAGAATGATTCAGGGAAACAGGTGCCAGCGGACAGTGTTTGCTTGGCAAAAAAAGCTCCACAGGTC
ACCAGTATTCTGGCTTCCAGTGATGGCTCTGCAGGGGATGTCCCTGAGCAGAGATCCAAGAGGAAAAAGG
GCCAAAGAAAAAGAAAACTGGACAATATCAAGATGGATCCAGAAGTCTGTGTCACTCTTGCCTCCAGTGA
TGCCTCGGCAGGGGATGTCCCTGTGCAGCGAACCAAAAGGAAGAGGGCTCACAAGACAAGGACACTTGTG
GATGTCAAAGCAGCTATCCAAGAGGGCAGCGTGCTGGCCTCCAGCACAGCCACCCCTGAAGCTGCCCCTG
GAGCCACCTCAAAGCTCAAGTTCCCCAGGAGGGGGAAGAAAAGGAGCATATGGGCTGTGAACCGTATAGA
GGGGATGAAACTCATACTGAACAAGAAGAGAAGAGCCAGCTACCGCCCTGAGGACCTCGAAGCCTTCTAC
CGACTTCTGGAGGATCCTGTGGTCCAGAATTTCTTGGCAGCGGACATTTTCTTCAGGGTGACTGACAAGT
ATCTGCTGTCTATGGTGGTGGAGTATTTTGGTCGAGTTGGGCTTCCTGGACATCTCTACAACAGGATCTA
CTTCTTCCTGGCCCTCTATATCGCCTGTGACATGGAAGAGGATGACCCCATATCCAAGAGGAGCATCTTC
CAATTCTTGCTGGGCAGAGACACCTGGCAAGGCTTATACAAGGATTTCCTGAAGCTGCAGAAGGATTTCA
TCCTAGCCATGGATTACCAAGCCTGGGTCACGCCAGATCAGTGTGCAGAGATCCAGAACCAGAACCCACA
GCACTGGGTCTGGAGTCGGGTGCGCCAGGGCACCCCTTAG

Translation (339 aa):
MSTPVASDTTPRLQKPTKGQKKKVPVKATIASDRRSEMSPVSSKESCKQNDSGKQVPADSVCLAKKAPQV
TSILASSDGSAGDVPEQRSKRKKGQRKRKLDNIKMDPEVCVTLASSDASAGDVPVQRTKRKRAHKTRTLV
DVKAAIQEGSVLASSTATPEAAPGATSKLKFPRRGKKRSIWAVNRIEGMKLILNKKRRASYRPEDLEAFY
RLLEDPVVQNFLAADIFFRVTDKYLLSMVVEYFGRVGLPGHLYNRIYFFLALYIACDMEEDDPISKRSIF
QFLLGRDTWQGLYKDFLKLQKDFILAMDYQAWVTPDQCAEIQNQNPQHWVWSRVRQGTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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