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Report for CCDS35722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35722.1 Public Mus musculus 1 Phlda3 23 108 98 CCDS HistoryNCBI Gene:27280Re-query CCDS DB by CCDS ID:35722.1Re-query CCDS DB by GeneID:27280See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 35722.1
This CCDS ID represents the protein described in PMIDs: 12374806 and 10594239 and is supported by AK003767.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 10594239. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 35722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038945.5 ENSMUSP00000040614.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038945.5Link to Ensembl Protein Viewer:ENSMUSP00000040614.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038945Re-query CCDS DB by Protein ID:ENSMUSP00000040614
Original member Current member NCBI NM_013750.2 NP_038778.1 Accepted alive Link to Nucleotide Sequence:NM_013750.2Link to Protein Sequence:NP_038778.1Re-query CCDS DB by Nucleotide ID:NM_013750Re-query CCDS DB by Protein ID:NP_038778Link to BLAST:NP_038778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038778.1 125 Q9WV95 125 100% 0 0

Chromosomal Locations for CCDS 35722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 135766449 135766826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (378 nt):
ATGACGGCGGCGGCGACCGTGCTGAAGGAGGGCGTGCTGGAGAAGCGCAGCGGCGGGCTGCTGCAGCTGT
GGAAGCGGAAGCGCTGCGTGCTCACCGAGCGCGGGCTGCAGCTCTTCGAGGCCAAGGGCACGGGCGGCCG
GCCCAAGGAGCTCAGCTTCGCCCGCATCAAAGCCGTGGAGTGCGTAGAGAGCACCGGGCGCCACATCTAC
TTCACGCTAGTGACCGAAGGCGGGGGCGAGATCGACTTCCGCTGCCCCCTCGAAGACCCTGGCTGGAACG
CTCAGATCACCCTGGGCCTGGTCAAGTTCAAGAATCAACAGGCCATCCAGACTGTGCGGGCCCGGCAGAG
TCTTGGGACTGGGACCCTTGTGTCCTAA

Translation (125 aa):
MTAAATVLKEGVLEKRSGGLLQLWKRKRCVLTERGLQLFEAKGTGGRPKELSFARIKAVECVESTGRHIY
FTLVTEGGGEIDFRCPLEDPGWNAQITLGLVKFKNQQAIQTVRARQSLGTGTLVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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