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Report for CCDS50243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50243.1 Public Mus musculus 18 Sft2d3 23 108 98 CCDS HistoryNCBI Gene:67158Re-query CCDS DB by CCDS ID:50243.1Re-query CCDS DB by GeneID:67158See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054984.7 ENSMUSP00000100656.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054984.7Link to Ensembl Protein Viewer:ENSMUSP00000100656.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000054984Re-query CCDS DB by Protein ID:ENSMUSP00000100656
Original member Current member NCBI NM_026006.1 NP_080282.1 Accepted alive Link to Nucleotide Sequence:NM_026006.1Link to Protein Sequence:NP_080282.1Re-query CCDS DB by Nucleotide ID:NM_026006Re-query CCDS DB by Protein ID:NP_080282Link to BLAST:NP_080282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080282.1 212 Q9CSV6 212 100% 0 0

Chromosomal Locations for CCDS 50243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31910600 31911238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGCGGATCTCCACCGCCAGCTGCAAGACTACCTGAAGCAGGGGAAAGCGAGCAGGCCGGCGGCCGCAG
AGCCGCTGCTCGGCGCGAAGGCAGCAGAGGAGCCTGAGGCCGGGGCCTGGCTAGGCAGCAGGGTTCTGCG
ATGGCCGTGGGCACAGAGCGCTGCCGAGCCGCCACCCGCGGGCTTGCGCTGCCTCCCCAGCGTGACGCGA
GGCCAGCGCCTGGTGGCGGGCGGCCTGTGTCTGCTGCTGGCCGCGCTCTGCTTCGGCCTGGCGGCGCTCT
ACGCGCCGGTGCTGCTGCTGCGCGCGCGCAAGTTCGCGCTCCTCTGGTCGCTGGGCTCGGTGCTGGCGTG
GGCGAGCGCGGCGCTGCTGCGGGGCGGCCCGGCGTGCGGCCGCCTGCTACGCGGCGAGGAGACGCCCTCG
CGGAGCACGCTTGGCTACGCCGCCGCCTTGGGCGCCACGCTCTACGCCGCGCTGGTCCTGCGCAGTACGG
TGCTGACGGCGCTCGGCGCTTGCGCACAGGTAGCCGCGCTGCTCTACGCGTTGATCGGGCTCCTGCCCTG
GGGCGGTGTGACGGCGCTGCGACTGGCGCTCGGTCGCCTAAATCGCGGGACTGGCCTAGCCAACGCGCTC
CCGGTGTGA

Translation (212 aa):
MADLHRQLQDYLKQGKASRPAAAEPLLGAKAAEEPEAGAWLGSRVLRWPWAQSAAEPPPAGLRCLPSVTR
GQRLVAGGLCLLLAALCFGLAALYAPVLLLRARKFALLWSLGSVLAWASAALLRGGPACGRLLRGEETPS
RSTLGYAAALGATLYAALVLRSTVLTALGACAQVAALLYALIGLLPWGGVTALRLALGRLNRGTGLANAL
PV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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