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Report for CCDS29026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29026.1 Public Mus musculus 17 Fshr 23 108 98 CCDS HistoryNCBI Gene:14309Re-query CCDS DB by CCDS ID:29026.1Re-query CCDS DB by GeneID:14309See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29026.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035701.5 ENSMUSP00000040477.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035701.5Link to Ensembl Protein Viewer:ENSMUSP00000040477.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035701Re-query CCDS DB by Protein ID:ENSMUSP00000040477
Original member Current member NCBI NM_013523.3 NP_038551.3 Accepted alive Link to Nucleotide Sequence:NM_013523.3Link to Protein Sequence:NP_038551.3Re-query CCDS DB by Nucleotide ID:NM_013523Re-query CCDS DB by Protein ID:NP_038551Link to BLAST:NP_038551.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038551.3 692 P35378 692 100% 0 0

Chromosomal Locations for CCDS 29026.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 88985170 88986394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 88988424 88988609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 89001711 89001785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 89001895 89001963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 89009267 89009344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 89011015 89011086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 89045071 89045145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 89046630 89046704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 89097310 89097381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 89200461 89200612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2079 nt):
ATGGCCTTGCTCCTGGTCTCCTTGCTGGCATTCTTGGGCTCGGGATCTGGATGTCATCACTGGCTGTGTC
ATTGCTCTAACAGGGTCTTCCTCTGCCAAGATAGCAAGGTGACCGAGATTCCGCCCGACCTCCCCCGGAA
CGCCATTGAACTGAGATTTGTGCTCACCAAGCTTCGAGTCATTCCAAAAGGATCATTTTCTGGATTTGGG
GACCTGGAGAAAATAGAGATCTCTCAGAATGATGTCTTGGAGGTAATAGAGGCAGATGTGTTCTCCAACC
TACCCAACTTGCATGAAATTAGGATTGAAAAGGCTAACAATCTGCTGTACATCAACCCTGAGGCCTTCCA
GAATCTTCCCAGTCTCCGATATCTGTTAATATCCAACACAGGCATTAAACACTTGCCAGCCTTTCACAAG
ATCCAGTCTCTCCAAAAGGTTTTATTAGACATTCAAGATAACATAAACATCCACATCATTGCCAGGAACT
CCTTCATGGGACTGAGCTTTGAAAGTGTAATTCTATGGCTGAATAAGAATGGGATTCAAGAAATACACAA
CTGTGCATTCAACGGAACCCAGCTAGATGAACTGAATCTAAGCGATAACAATAATTTGGAAGAATTGCCT
GATGATGTTTTCCAGGGAGCCTCTGGGCCAGTCGTTTTAGACATCTCAAGGACAAAGGTCTATTCCCTGC
CCAACCATGGCTTAGAAAATCTGAAGAAGTTGAGGGCCAGGTCAACATACCGCTTGAAAAAGCTCCCTAG
TCTAGACAAGTTTGTCATGCTCATTGAGGCCAGCCTTACCTACCCCAGTCACTGCTGTGCCTTTGCAAAC
TGGAGGCGGCAAACCTCTGAACTTCATCCAATTTGCAACAAGTCTATTTCAAGGCAAGATATTGATGATA
TGACTCAGCCTGGGGATCAGAGAGTCTCTCTCGTAGATGATGAACCCAGTTATGGAAAAGGATCTGACAT
GTTGTATAGTGAATTTGACTATGACTTATGCAATGAATTTGTTGATGTGACCTGCTCGCCAAAGCCAGAT
GCATTTAATCCATGTGAAGACATCATGGGGTACAACATCCTCAGAGTCTTGATATGGTTTATCAGCATCC
TGGCCATCACTGGGAACACCACAGTGCTGGTGGTCCTGACCACAAGCCAATACAAACTCACTGTGCCCCG
GTTCCTTATGTGTAACCTCGCCTTTGCTGATCTTTGCATTGGGATCTACTTGCTACTTATAGCCTCAGTT
GATATCCATACTAAGAGCCAGTACCACAATTACGCCATTGACTGGCAAACAGGAGCAGGCTGCGATGCCG
CTGGCTTTTTCACTGTCTTTGCCAGTGAACTGTCAGTCTACACATTGGCAGCCATAACCCTAGAAAGATG
GCATACCATCACACATGCCATGCAACTGGAATGCAAGGTACAGCTCTGCCATGCTGCCAGCATCATGGTG
CTGGGCTGGGCCTTTGCCTTTGCGGCTGCTCTCTTCCCCATCTTTGGCATCAGTAGCTACATGAAAGTGA
GCATCTGCCTGCCCATGGATATCGACAGCCCTTTGTCGCAGCTGTATGTTATGGCCCTCCTCGTACTCAA
CGCCCTGGCCTTTGTGGTCATCTGTGGTTGCTACACCCACATCTACCTCACAGTGAGGAATCCTAACATT
GTGTCCTCGTCAAGAGACACCAAGATTGCCAAGCGCATGGCCACACTCATCTTCACGGACTTTCTCTGCA
TGGCCCCAATTTTATTCTTTGCCATTTCCGCCTCCCTCAAGGTGCCCCTCATCACTGTGTCCAAGGCCAA
GATCCTCCTAGTTCTGTTCTACCCCATCAATTCTTGTGCCAATCCTTTCCTCTATGCCATTTTCACCAAG
AACTTCCGCAGGGACTTCTTCGTCCTGATGAGCAAGTTTGGCTGTTATGAGGTGCAAGCCCAGATTTACA
AGACAGAAACCTCATCTATTACCCACAACTTCCACTCCAGAAAGAATCCCTGTTCCTCGGCTCCCAGAGT
CACCAATAGTTACGTGCTTGTCCCTCTAAATCATTCAGTCCAGAACTAA

Translation (692 aa):
MALLLVSLLAFLGSGSGCHHWLCHCSNRVFLCQDSKVTEIPPDLPRNAIELRFVLTKLRVIPKGSFSGFG
DLEKIEISQNDVLEVIEADVFSNLPNLHEIRIEKANNLLYINPEAFQNLPSLRYLLISNTGIKHLPAFHK
IQSLQKVLLDIQDNINIHIIARNSFMGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP
DDVFQGASGPVVLDISRTKVYSLPNHGLENLKKLRARSTYRLKKLPSLDKFVMLIEASLTYPSHCCAFAN
WRRQTSELHPICNKSISRQDIDDMTQPGDQRVSLVDDEPSYGKGSDMLYSEFDYDLCNEFVDVTCSPKPD
AFNPCEDIMGYNILRVLIWFISILAITGNTTVLVVLTTSQYKLTVPRFLMCNLAFADLCIGIYLLLIASV
DIHTKSQYHNYAIDWQTGAGCDAAGFFTVFASELSVYTLAAITLERWHTITHAMQLECKVQLCHAASIMV
LGWAFAFAAALFPIFGISSYMKVSICLPMDIDSPLSQLYVMALLVLNALAFVVICGCYTHIYLTVRNPNI
VSSSRDTKIAKRMATLIFTDFLCMAPILFFAISASLKVPLITVSKAKILLVLFYPINSCANPFLYAIFTK
NFRRDFFVLMSKFGCYEVQAQIYKTETSSITHNFHSRKNPCSSAPRVTNSYVLVPLNHSVQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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