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Report for CCDS18352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18352.1 Public Mus musculus 4 Dmrta1 23 108 98 CCDS HistoryNCBI Gene:242523Re-query CCDS DB by CCDS ID:18352.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18352.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052478.2 ENSMUSP00000057488.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052478.2Link to Ensembl Protein Viewer:ENSMUSP00000057488.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052478Re-query CCDS DB by Protein ID:ENSMUSP00000057488
Original member Current member NCBI NM_175647.3 NP_783578.1 Accepted alive Link to Nucleotide Sequence:NM_175647.3Link to Protein Sequence:NP_783578.1Re-query CCDS DB by Nucleotide ID:NM_175647Re-query CCDS DB by Protein ID:NP_783578Link to BLAST:NP_783578.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783578.1 490 Q8CFG4 490 100% 0 0

Chromosomal Locations for CCDS 18352.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 89688309 89688939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89691436 89692277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGAGCGATTACCTCACGGTCGTAGAGACCGCAGCGGCGGCTGCCGACCCCATCTGGCCCCAGGGCGGG
CTGCTGCGCCCGCTTCGGCCGCGCGGTCGGTGTCGTCGGGGATTCCGGTGTCCGCGACTTTCCTGCGGCC
GCCTGGCCTTTTTCTGCGATCGACCGCAAGCTCCGGTCGCGCAGGATGCGCTCCGGGCCCTGGGCTGGAT
AGGGCGTTGGGGGCGGTAGGCTGCGGCTACCCGCGGACCCCGAAGTGCGCGCGCTGTCGCAACCATGGCG
TGGTGTCAGCGCTCAAGGGCCACAAGCGCTTCTGCCGCTGGCGGGACTGCGCGTGTGCCAAGTGCACCCT
GATCGCCGAGCGGCAGCGTGTCATGGCCGCGCAGGTGGCCCTGCGCAGGCAGCAGGCGCAGGAGGAGAGC
GAGGCCCGCGGGCTGCACAGGCTTCTGTACCAGGGGTCGTCGGGGTCCGGGGCTCAGGCTTCCGGGGGCA
GCGGCAGGACCGAGAGTCCCCAGGTCTTGAATAACCCCATGGCTGTAGCTGTTCTGGGAGCGGGTGCCTC
TAGACACCCTGGGAGCCGGTCAGTCCCAACTTTCGAGGTTTTCCAGCAAGATTATGCTGACAGAAAGCAG
GAACCAAAACAGAGAAACTGTGAGTCATGCCAGAGTAGACAGGAAGAACCAGTCTCCAACACTCATCACC
ATTCTCTGGGATCATCTAAGGGTAATGTGACCGTGGAGAAACAGGGCTTCATGTCATCTATTCCAGAACA
CCCAGACAAATCCACCATCATCCTGTCTCCTTGCCCCACGGATCAATCGGGAGGAGAAGACAGTCCCAGG
TCTTTCTCTTCCTCTGACCTGGAATCAGGGAATGAAAGCGAGTGGGCCAGAGACTACATTGCTACCAGAG
CCAGCCTTTCCACGGTGACCTCAAGACCACGAGACCCTCTCGGAATTCTTACCAGGATCTTTCCAGGTTA
CAAGCATAGCCGCCTAGAAGGCATTCTACAGTTCTGCAAGGGAGATGTAGTCCAAGCTATTGAACAGATC
TTAAATGGGAGAGAACATAAACCCGACTGCAGGGACCTAGCACGCGCAGACTTGGAAAATGCAGCCTTTC
AGAGAGCGTCAGATTTTAGTCTTGCTGGCATTGGCTTTGGGACTCTAAGTAATAAATCAGCTCTCTCTCC
TCTTGAAGCTGCGTCTGCTGCTTATGGAGGAGATTCAACTCTCTACAGTTTCAATCCTAGACTAGCTTTC
AGCCCACTGCGCCTGGCATATTCTTCTCCAGGAAGAGCGCTGTCTGGTTTTGTGTCACCCTACCTAACAC
CTGGACTGGTTCCAGCATTGCCTTTTCGGCCAACTTTGGATTATGCGTTTCCAGGGATGATTAGGGAGCC
GTCCCACCTCCCTAGCAAGCACTTAGTAGCTGGTGGTAGACTGTATTTCAGGCCCAATCAGGAGCATCTG
TAA

Translation (490 aa):
MERLPHGRRDRSGGCRPHLAPGRAAAPASAARSVSSGIPVSATFLRPPGLFLRSTASSGRAGCAPGPGLD
RALGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEES
EARGLHRLLYQGSSGSGAQASGGSGRTESPQVLNNPMAVAVLGAGASRHPGSRSVPTFEVFQQDYADRKQ
EPKQRNCESCQSRQEEPVSNTHHHSLGSSKGNVTVEKQGFMSSIPEHPDKSTIILSPCPTDQSGGEDSPR
SFSSSDLESGNESEWARDYIATRASLSTVTSRPRDPLGILTRIFPGYKHSRLEGILQFCKGDVVQAIEQI
LNGREHKPDCRDLARADLENAAFQRASDFSLAGIGFGTLSNKSALSPLEAASAAYGGDSTLYSFNPRLAF
SPLRLAYSSPGRALSGFVSPYLTPGLVPALPFRPTLDYAFPGMIREPSHLPSKHLVAGGRLYFRPNQEHL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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