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Report for CCDS18752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18752.1 Public Mus musculus 4 Gpatch3 23 108 98 CCDS HistoryNCBI Gene:242691Re-query CCDS DB by CCDS ID:18752.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030662.2 ENSMUSP00000030662.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030662.2Link to Ensembl Protein Viewer:ENSMUSP00000030662.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030662Re-query CCDS DB by Protein ID:ENSMUSP00000030662
Original member Current member NCBI NM_172876.2 NP_766464.1 Accepted alive Link to Nucleotide Sequence:NM_172876.2Link to Protein Sequence:NP_766464.1Re-query CCDS DB by Nucleotide ID:NM_172876Re-query CCDS DB by Protein ID:NP_766464Link to BLAST:NP_766464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766464.1 525 Q8BIY1 525 100% 0 0

Chromosomal Locations for CCDS 18752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133574760 133575210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133577907 133578334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133579786 133579960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133580651 133580710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133582472 133582593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133582982 133583109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133583619 133583832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGCGTCGCCCAGGGAGCTGGACGAAGAGTCGCCGGTTTACCTGGTGGTGAGCGGGATCCCTGCCGTGT
TACGCTCGGCTCAGTTACGGAGCTACTTTAGCCAGTTCCGGGAACAGCGCGGCGGAGGCTTCCTGTGCTT
CCACTACCGGCACCGGCCCGAGAGGGGCCCTCCGCAGGCGAGTCCCGAGGCGGCCCGGGCTGGCCCGGAC
CCCGCCGCTGAGGATCCGGTTCTCGCCCAGGCTCCGGCCTCCGATGCCCGCGCTGTCCGCGCCCGGGGCT
CTGCGGCAGCCCAGACCCGCACCTGCTGCTGCGTCGTCTCGGTGAGGGGAGCGGCGCAAGCCCAGCGGCT
GCTTCGCATGTACTCCGGTCGCCGGTGGCTGGACTCTCAGGGGACCTGGCTTCCCGGTCGCTGTCTCATC
CGCAGGCTTAGGCTTCCCACCGAGGTTTCAGATCTGGGGTCCTTTCCCTTTAAGACCCGGAAGGAACTAC
AGAGTCGAAGGGCGGAGAATGAAGCTTTTACCCTGGCTGACCTGAAGCAGCTCCCGGAGCTGAATCCGCC
AGTGCTGATGCCCAATGGCAATGTGGGCACCCCCCTGCGGGTCTTTTTAGAGTTGATCCGGTCCTGCCGT
CTACCACCTAGAATCATTACCCAGCTACAGCTCCAGTTTCCCAAGACCGGCTCCTCCCGGCGCTATGGCA
ACGTGCCCTTTCTGTATGAGGACTCAGAGACTGTGGAGCAAGAAGAGCACGTGTACACAGCAGAAGGGGA
GGAGATCCCCCAGGGGAGCTGCTCGGAAGATCCAGCAGCTGGCTCCTTTGATGAGCCGGAGGATGAAGGG
CAGCAGCAGGAGGAGGAGGAGGAGTCTGGCTCAGAAGAGGACGATGACCGGGGTGAGGAGTGGGAGCGAC
ACGAAGCTCTGCACGAGGATGTGACCGGGCAGGAGCGGACTACAGAGCGGCTCTTCGAGGAGGAGATTGA
ACTTAAGTGGGAGAAAGGTGGCTCTGGCCTCGTGTTCTACACCGACGCTCAGTTCTGGCAGGAGGAGGAA
GGAGATTTTGATGAGCAGACAGCTGATGACTGGGACGTGGACATGAGCGTCTACTACGACAGAGATGGAG
GAGACAAGGATGCCCGTGACTCTGTCCAAATGCGCCTGGAACGGAGACTCCGTGAGGGTCAGGAAGATGG
CTCTGTGCTAGGTGGCCAAGTCGGCACCTTTGAGCGCCACACCAAGGGCATCGGCCGGAAGGTGATGGAG
CGCCAGGGCTGGGCTGAAGGCCAGGGCCTGGGCAGCAGGTGCTCCGGGGTGCCTGAGGCCCTGGATGGAG
ATGGCCAGCATCCTAGATGCAAGCGCGGCTTGGGATACCATGGAGAGAAGTTACAGCCATTTAGGCAACT
GAAGAGGCCCCGTCGAACTGGCTTGGGGCTCATTTCCACCATCTATGATGAGCCTCTGCCCCAAGACCAG
GGGGAGACCTTGCTCCGGCGCCAGCCACCCACCAGCATGAAGTTTCGGACAGATATGACTTTTGTGAAGG
GTTCTAGCTGTGCCTTGGACAGACCTGAGCCCGAGTGA

Translation (525 aa):
MASPRELDEESPVYLVVSGIPAVLRSAQLRSYFSQFREQRGGGFLCFHYRHRPERGPPQASPEAARAGPD
PAAEDPVLAQAPASDARAVRARGSAAAQTRTCCCVVSVRGAAQAQRLLRMYSGRRWLDSQGTWLPGRCLI
RRLRLPTEVSDLGSFPFKTRKELQSRRAENEAFTLADLKQLPELNPPVLMPNGNVGTPLRVFLELIRSCR
LPPRIITQLQLQFPKTGSSRRYGNVPFLYEDSETVEQEEHVYTAEGEEIPQGSCSEDPAAGSFDEPEDEG
QQQEEEEESGSEEDDDRGEEWERHEALHEDVTGQERTTERLFEEEIELKWEKGGSGLVFYTDAQFWQEEE
GDFDEQTADDWDVDMSVYYDRDGGDKDARDSVQMRLERRLREGQEDGSVLGGQVGTFERHTKGIGRKVME
RQGWAEGQGLGSRCSGVPEALDGDGQHPRCKRGLGYHGEKLQPFRQLKRPRRTGLGLISTIYDEPLPQDQ
GETLLRRQPPTSMKFRTDMTFVKGSSCALDRPEPE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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