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Report for CCDS38921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38921.1 Public Mus musculus 4 Myom3 23 108 98 CCDS HistoryNCBI Gene:242702Re-query CCDS DB by CCDS ID:38921.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105854.1 ENSMUSP00000101480.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105854.1Link to Ensembl Protein Viewer:ENSMUSP00000101480.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105854Re-query CCDS DB by Protein ID:ENSMUSP00000101480
Original member Current member NCBI NM_001085509.2 NP_001078978.1 Accepted alive Link to Nucleotide Sequence:NM_001085509.2Link to Protein Sequence:NP_001078978.1Re-query CCDS DB by Nucleotide ID:NM_001085509Re-query CCDS DB by Protein ID:NP_001078978Link to BLAST:NP_001078978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078978.1 1439 A2ABU4 1439 100% 0 0

Chromosomal Locations for CCDS 38921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135762520 135762680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135763643 135763723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135764789 135764948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135765544 135765701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135770671 135770766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135771532 135771620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135773765 135773809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135774281 135774421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135775545 135775706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135776335 135776476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135778037 135778236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135779353 135779406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135779800 135779927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135783015 135783198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135785814 135785988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135787399 135787520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135787895 135788082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135788288 135788414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135789534 135789712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135795082 135795196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135796281 135796437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135796964 135797073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135797454 135797498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135798295 135798431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135801002 135801146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135801342 135801401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135801716 135801783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135803208 135803318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135806038 135806125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135806884 135806922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135807169 135807277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135808796 135808959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135810749 135810785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135810935 135810957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135812444 135812499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135814156 135814419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4320 nt):
ATGACTCTGCCCCACAGCCCTGGGAGTGCCGGGGAGCCCCAAGCCTCCCAGACCGTGCAGGTCCACAGGC
TGGAACACAGGCAGGAGGAGGAGCAGAAAGAGGAGCGGCAGCACAGCCTGCAGATGGGTTCTTCCGTGCA
GAGGCGGACCTACCGCAGCAGTGAGGAGGAACAACAGTTCAGCTCTGAAGACTATGCCCTGGCTGCTGCC
CTGGCCCTGACAGCCTCCTCAGAGTTGTCCTGGGAAGCTAAGCTGAGACGCCAGACCACCACAGTGGAGC
TGGAGGAGCGTGGACAGAGGCGGGTAGGCTTTGGCAATGACCTGGAGCGGATGGAGCTGGCCTTCCTACG
CACTCAGAGGCTGCTGCGTCAGAGGCGAGACTGGAAGGCGCTGCGGCAACGGACAGAGGAGAAGGTCCGA
GAGGCCAAGGAACTGATCGAGTTGTGCTCTGGCCGCGGCCCCTGGTTCTGGATCCCGCTTCGATCGCATG
CCGTCTGGGAGCACACCACGGTACTGCTGACCTGCACCGTCCAGGGCTCACCTCCATTCCAGGTCACCTG
GTACAAGAACGACATCCGGATCGATCCCCGCCTCTTTCCAGCCGGCAAGTACCGTATCACCAACAACTAC
GGGCTGCTGACCCTGGAGATCATGAGGTGCACGGTGGAGGACTCGGCCACCTACACTGTGCTGGTGAAGA
ACGCCTACGGCCAGGCCTCTTCCTTTGCCAAAGTCCTCATCCGCAATTACCTGGGGAAAGATGCTGGCTT
TGACTCGGAGATCTTTAAACGATCTATGTTCGGCCCCAGCGCGGAGTTTACATCGGTGTTGAAGCCAATC
TTTGCCCAAGAGAAAGAGCCTTTCTCCCTGACCTGTTTGTTCTCAGACGATGTATTAGAAGCTGAGCAGA
GAATCCAGTGGTACAGAGATGGCAGGCTACTGAGGTCTTCAACACGCAGGCAGATACTCTACGCAGACCG
CCAGGCCTCCGTGAAGGTGTCCTGTGCCTACAAAGAGGACGAGGGGTTCTACACAATCCGAGTCTCCTCG
CCCTTTGGGCCGCAGGAGCAGAGCGCCTATGTCTTTATAAGAGATGCTGCAGCTGAGAAGCCAGGAGCCC
CAGGCTCGCCACTAAACGTCCGGTGTCTGAATGTGCATAGAGACTGCCTGACCCTGACCTGGGTCCCGCC
CAGCGACACCCGGGGCAGCACCATCACTGGCTATTCCATTGAGATGTGCCAGGGTGATTCGGAGGAGTGG
ATGCCCTGCCTTAAGGCCCCCGGGGGAACCTGCCGGTGCCCGATCCAAGGCCTCGTTGAAGGACAGAGCT
ATCAGTTCCGAGTGCGCGCCATCAGCAAAGCCGGCACCAGTCTCCCTTCCAAGGCCTCAGAAGCAGTTGT
CACGGGTGACTATGATGCAGTCCATAAGAGTACAGAGATTCCCTATGACCTGGGCAGCAAGATCACCATC
AGCAAGAACGATTTCGAAGATGCTGTGACCATTCCCTCAGCCCCAACCAATGTCCACGCCAGCGAGATCA
GAGAAGCCTATGCGGTTCTGAGCTGGGAGGAGCCACGCCCCCGGGGCAGAGCCCCGCTGACTTACACTCT
GGAAAAGTCCGTCATCGGTAGTGGAACCTGGGAGGCCATCAGCACGGAAACACCCATCAAGTCCCCAAGA
TTCGCCCTCCTGGACTTAGAGAAGGGGAAATCGTATGTCTTCAGAGTGAGAGCCTTGAACCAGTACGGCA
TGAGTGATCCCTCAGAGCCCAGCGAGCCTGTCGCCCTGAAGGGCAAGCCAGCGACTCTCCCTCCTCCAGC
TCAAGTTCAAGCTTTCCGAAACACTCAGACCTCTGTCTCCCTTGCCTGGGAGCCCGTGGATGGTGGCTCG
GAGCTCCTGGGTTATTACATCTACTCCCGCGAGGCCGGAGCATCAGAGTGGCAGACTGTGAACAACAAAC
CCATCCAGGACACCAAGTTCACAGTCCCAGGGCTGAGGACTGGGAAGGAGTACGACTTTTGCATCAGGTC
GGTCAGCGAGGCTGGGGTTGGTGAGAGTTCAGCTGCCACACAGCCAGTCAGGGTCAAGCAAGCACTAGCC
ACTCCATCGGCCCCATATGACTTCGCACTCCTAAACTGTGGGAAGAATGAAATGGTCATTGGATGGAAAC
CCCCCAAGCGACGCGGAGGCGGCAAGATCCTGGGCTACTTCATGGACCAGCATGATTCAGTGGAGTCAGA
CTGGCACCCAGTCAACCGTCAGCCCATCCCAAGCCGTGTGTGCAAGGTCACCAACCTTCATGAAGGCCAT
TTCTATGAGTTCCGAGCCCGGGCCGTGAACTGGGCAGGTATTGGCGAGCTGTCGGCACCCAGCAGCCTGT
TTGAGTGCAAAGAGTGGACGATGCCGGAGCCAGGTCCCCCATATGATGTGAGGGTGTCTGAGGTACAGGC
CACGTCTGTGATGCTGCAGTGGGAGCCCCCACTGTATATTGGAGCCGGGCCAGTCACAGGCTACCATGTC
AGCTTCCAGGAGAAAGGCTCTGAGGAGTGGAAGCCGGTCACCCCAGATGCCACCTCTGACACCCACCTCA
GGGTGTCTGACTTACAACCGGGAAAGCAATACATGTTCAGGGTCCAGGCCATGAACTCAGCTGGTCTGGG
ACAACCATCGGTGCCCACTGACCCTGTGCTCCTGGAGGACAAGCCAGACGCCCAGGAGATTGAAGTTGGT
GTGGACGACGAGGGCCAGATCTACTTGGCTTTTGAAGCCCCCGAAGCCCCTGACTTCCCTGAGTTTCAGT
GGTCCAAGGATTACCAAGGCCCACCAGACCCACAGAGGGTGGAGGTGGAAGATGAAATTAGCAAGTCCAA
GGTCATCCTGAAAGAACCTGACCTTCAGGACTTGGGCATCTACTCAGTGGTAGTCCCCGATGCCGACGAA
GACACCTCTGCTAGCCACACGCTGACGGAGGAAGAGCTGAACAAGCTGAAGAAGCTGAGTCACGAGATCA
GAAACCCAGTCATCAAGCTGATCTCTGGCTGGAACGTGGAAATCCTCGAGCAAGGTGAGGTGCGGCTGTG
GCTGGAGGTGGAGAAACTGTCGCCCGCCGCCGAGCTGCACCTCATCTTCAACGAGAAGGAGATCTTCAGC
TCCCCGAACCGCAAGATCAACTTTGACCGAGAGAAGGGCTTAGTGGAAGTTATCATCCAACAACTTTCCG
AAGATGACAAGGGGTCCTACACCGCCCAGCTCCAAGATGGAAAAGCCAAGAACCAGATCACTCTCGCCCT
GGTGGATGACGAATTTGACAAGCTCCTGAGAAAGGCAGACGCAAAGAGAAGAGACTGGAAGAGAAAACAG
GGTCCCTATTTCCAGGAGCCTTTGACCTGGAAGGTCACAGATGACTGCCAAGTGCTTCTGTCGTGCAAGG
TAACAAACACGAAGAAGGAGAGTCGCTTTCAGTGGTTCTTCCAGAAGAAAGAGGCGCCACATGGGCAGTA
CAACCCGCCGACCGGAGATGGGAGTCTCTCCATTGAGGGGTTTTCCAAAGAAAACCAGGGAGTCTACAGA
GCCGTGGTTTCTGACGAGAGAGGGGAAGATGACACTGTGCTGGACCTCACAGGTGAAGCCCTAGATGCCG
TCCTCACTGAGCTGGGCAGGATTGGTGCTCTCTCTGCAACCCCACTGAAAATCCAGGGGACTGAAGAGGG
CATCCGGCTCTTCAGCAAGGTCAAATACTACAACGTGGACTACATGAAGACGGCGTGGTTCCACAAAGAT
AAGCGGCTGGAGAGTGGCGATCGGGTACGGGCAGGCACCACCCTGGATGAGATTTGGCTCCACATCCTGG
ACCCTAAGGACTCAGATAAAGGCAAATACACCCTGGAGATCACTGCTGGGAAGGAAGTCCGGCAGCTCTC
AGCAGACCTGTCTGGACAAGCTTTTGATGACGCCCTGGCAGAGCACCAGAGACTGAAGGCCTTGGCTGTC
ATTGAGAAGAATCGGGCTAAAGTGGTAAGGGGCCTGCCAGACGTGGCCACCATCATGGAAGATAAGACCC
TGTGCCTGACCTGTGTCATCTCGGGAGACCCGTCCCCTGAAATCTCTTGGCTAAAGAACGACCAGCCTAT
CTCCTTCTTTGACCGATACCACATGGAGGTGAAGGGTACGGAGGTCACCGTCACCATTGACAAGGTCACC
AGCGAAGATAGCGGGCGCTATGGAATCTTCGTCAAGAACAAGTATGGTTCGGAGACAGGCCAGGTCACCA
TCAGCGTGTTCAAACATGGGGAGGAGCCCAAGGAGCTGAAGAAGAAGTAA

Translation (1439 aa):
MTLPHSPGSAGEPQASQTVQVHRLEHRQEEEQKEERQHSLQMGSSVQRRTYRSSEEEQQFSSEDYALAAA
LALTASSELSWEAKLRRQTTTVELEERGQRRVGFGNDLERMELAFLRTQRLLRQRRDWKALRQRTEEKVR
EAKELIELCSGRGPWFWIPLRSHAVWEHTTVLLTCTVQGSPPFQVTWYKNDIRIDPRLFPAGKYRITNNY
GLLTLEIMRCTVEDSATYTVLVKNAYGQASSFAKVLIRNYLGKDAGFDSEIFKRSMFGPSAEFTSVLKPI
FAQEKEPFSLTCLFSDDVLEAEQRIQWYRDGRLLRSSTRRQILYADRQASVKVSCAYKEDEGFYTIRVSS
PFGPQEQSAYVFIRDAAAEKPGAPGSPLNVRCLNVHRDCLTLTWVPPSDTRGSTITGYSIEMCQGDSEEW
MPCLKAPGGTCRCPIQGLVEGQSYQFRVRAISKAGTSLPSKASEAVVTGDYDAVHKSTEIPYDLGSKITI
SKNDFEDAVTIPSAPTNVHASEIREAYAVLSWEEPRPRGRAPLTYTLEKSVIGSGTWEAISTETPIKSPR
FALLDLEKGKSYVFRVRALNQYGMSDPSEPSEPVALKGKPATLPPPAQVQAFRNTQTSVSLAWEPVDGGS
ELLGYYIYSREAGASEWQTVNNKPIQDTKFTVPGLRTGKEYDFCIRSVSEAGVGESSAATQPVRVKQALA
TPSAPYDFALLNCGKNEMVIGWKPPKRRGGGKILGYFMDQHDSVESDWHPVNRQPIPSRVCKVTNLHEGH
FYEFRARAVNWAGIGELSAPSSLFECKEWTMPEPGPPYDVRVSEVQATSVMLQWEPPLYIGAGPVTGYHV
SFQEKGSEEWKPVTPDATSDTHLRVSDLQPGKQYMFRVQAMNSAGLGQPSVPTDPVLLEDKPDAQEIEVG
VDDEGQIYLAFEAPEAPDFPEFQWSKDYQGPPDPQRVEVEDEISKSKVILKEPDLQDLGIYSVVVPDADE
DTSASHTLTEEELNKLKKLSHEIRNPVIKLISGWNVEILEQGEVRLWLEVEKLSPAAELHLIFNEKEIFS
SPNRKINFDREKGLVEVIIQQLSEDDKGSYTAQLQDGKAKNQITLALVDDEFDKLLRKADAKRRDWKRKQ
GPYFQEPLTWKVTDDCQVLLSCKVTNTKKESRFQWFFQKKEAPHGQYNPPTGDGSLSIEGFSKENQGVYR
AVVSDERGEDDTVLDLTGEALDAVLTELGRIGALSATPLKIQGTEEGIRLFSKVKYYNVDYMKTAWFHKD
KRLESGDRVRAGTTLDEIWLHILDPKDSDKGKYTLEITAGKEVRQLSADLSGQAFDDALAEHQRLKALAV
IEKNRAKVVRGLPDVATIMEDKTLCLTCVISGDPSPEISWLKNDQPISFFDRYHMEVKGTEVTVTIDKVT
SEDSGRYGIFVKNKYGSETGQVTISVFKHGEEPKELKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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