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Report for CCDS19320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19320.1 Public Mus musculus 5 Kctd8 23 108 98 CCDS HistoryNCBI Gene:243043Re-query CCDS DB by CCDS ID:19320.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054095.5 ENSMUSP00000055326.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054095.5Link to Ensembl Protein Viewer:ENSMUSP00000055326.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054095Re-query CCDS DB by Protein ID:ENSMUSP00000055326
Original member Current member NCBI NM_175519.5 NP_780728.3 Accepted alive Link to Nucleotide Sequence:NM_175519.5Link to Protein Sequence:NP_780728.3Re-query CCDS DB by Nucleotide ID:NM_175519Re-query CCDS DB by Protein ID:NP_780728Link to BLAST:NP_780728.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780728.3 476 Q50H33-1 476 100% 0 0

Chromosomal Locations for CCDS 19320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69110335 69110795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69340332 69341301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCTCTGAAGGACACGGGCAGCGGCGGCAGCACCATCCTCCCGATCAGCGAGATGGTGTCCGCGTCCA
GCTCTCCCGGCGCTCCGCTGGCCGCCGCCCCGGGGCCCTGCGCCCCGTCGCCCTTCCCCGAGGTAGTGGA
GCTGAATGTTGGCGGCCAGGTTTATGTGACCAAGCATTCGACGTTACTCAGCGTCCCGGACAGCACTCTG
GCCAGCATGTTCTCACCCTCTAGTCCCCGGGGCGGCGCTAGGCGCCGGGGCGACTTGCCCAGGGACAGCC
GCGCGCGCTTCTTCATCGACCGCGACGGCTTCCTCTTTAGGTACGTGCTGGATTACCTGCGCGACAAGCA
GCTGGCACTGCCCGAGCACTTTCCCGAGAAGGAGAGGCTCCTGCGCGAAGCAGAGTTCTTTCAGCTCACC
GACCTGGTCAAGCTGCTGTCGCCCAAGGTCACCAAGCAGAACTCGCTCAACGATGAGTGCTGCCAGAGCG
ACCTGGAGGACAACGTTTCCCAGGGCAGCAGCGACGCACTGCTGCTGCGTGGGGCGGCGGCTGGCGCGCC
CTCGGGCTCTGGGGCACATGGTGTCAGTGGTGTAGTCGGTGGTGGCAGCGCTCCGGACAAGCGCTCTGGG
TTCCTCACCCTGGGCTACCGTGGCTCTTACACCACGGTGCGAGATAACCAGGCAGATGCCAAGTTCAGGC
GTGTGGCGCGCATCATGGTGTGTGGGCGCATAGCCTTGGCCAAGGAGGTCTTTGGGGACACTCTTAATGA
GAGTCGCGACCCTGACCGTCAGCCTGAGAAGTACACATCCCGCTTCTACCTCAAGTTCACCTACTTGGAG
CAGGCGTTCGATCGACTGTCTGAGGCCGGCTTCCACATGGTGGCGTGCAACTCCTCTGGCACTGCCGCCT
TTGTCAACCAGTACCGAGACGACAAGATCTGGAGCAGTTACACTGAATACATCTTCTTCCGACCACCTCA
GAAAATAGTGTCACCCAAGCAAGAACATGAAGACAGGAAACGCGACAAAGTCACAGACAAAGGAAGTGAG
AGTGGGACTTCCTGCAATGAGCTCTCCACATCCAGCTGTGACAGCCACTCAGAGGCCAGCACTCCACAGG
ACAACCCAGCCAACACTCAGCAGGCTGCAGCTCACCAGCCTAACACCTTAACCTTGGATAGACCCTCCAG
GAAAGCACCTGTTCAGTGGATGCCACCACCAGACAAGCGCAGAAACAGTGAACTCTTTCAGTCACTCATC
AGCAAGTCCCGAGAAACAAATCTCTCCAAAAAGAAGGTCTGTGAGAAGCTAAGTGTAGAAGAAGAAATGA
AAAAGTGTATTCAGGATTTTAAAAAAATCCATATTCCAGATTGTTTTCCAGAGCGCAAACGCCAGTGGCA
ATCTGAACTCCTCCAAAAATATGGGTTGTAA

Translation (476 aa):
MALKDTGSGGSTILPISEMVSASSSPGAPLAAAPGPCAPSPFPEVVELNVGGQVYVTKHSTLLSVPDSTL
ASMFSPSSPRGGARRRGDLPRDSRARFFIDRDGFLFRYVLDYLRDKQLALPEHFPEKERLLREAEFFQLT
DLVKLLSPKVTKQNSLNDECCQSDLEDNVSQGSSDALLLRGAAAGAPSGSGAHGVSGVVGGGSAPDKRSG
FLTLGYRGSYTTVRDNQADAKFRRVARIMVCGRIALAKEVFGDTLNESRDPDRQPEKYTSRFYLKFTYLE
QAFDRLSEAGFHMVACNSSGTAAFVNQYRDDKIWSSYTEYIFFRPPQKIVSPKQEHEDRKRDKVTDKGSE
SGTSCNELSTSSCDSHSEASTPQDNPANTQQAAAHQPNTLTLDRPSRKAPVQWMPPPDKRRNSELFQSLI
SKSRETNLSKKKVCEKLSVEEEMKKCIQDFKKIHIPDCFPERKRQWQSELLQKYGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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