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Report for CCDS39478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39478.1 Public Mus musculus 6 Lrrc61 23 108 98 CCDS HistoryNCBI Gene:243371Re-query CCDS DB by CCDS ID:39478.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101436.2 ENSMUSP00000098979.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101436.2Link to Ensembl Protein Viewer:ENSMUSP00000098979.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000101436Re-query CCDS DB by Protein ID:ENSMUSP00000098979
Original member Current member EBI ENSMUST00000114545.7 ENSMUSP00000110192.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114545.7Link to Ensembl Protein Viewer:ENSMUSP00000110192.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114545Re-query CCDS DB by Protein ID:ENSMUSP00000110192
Original member NCBI NM_001110160.1 NP_001103630.1 Updated not alive Link to Nucleotide Sequence:NM_001110160.1Link to Protein Sequence:NP_001103630.1Re-query CCDS DB by Nucleotide ID:NM_001110160Re-query CCDS DB by Protein ID:NP_001103630
Current member NCBI NM_001110160.2 NP_001103630.1 Accepted alive Link to Nucleotide Sequence:NM_001110160.2Link to Protein Sequence:NP_001103630.1Re-query CCDS DB by Nucleotide ID:NM_001110160Re-query CCDS DB by Protein ID:NP_001103630Link to BLAST:NP_001103630.1
Original member NCBI NM_177736.3 NP_808404.2 Updated not alive Link to Nucleotide Sequence:NM_177736.3Link to Protein Sequence:NP_808404.2Re-query CCDS DB by Nucleotide ID:NM_177736Re-query CCDS DB by Protein ID:NP_808404
Current member NCBI NM_177736.4 NP_808404.2 Accepted alive Link to Nucleotide Sequence:NM_177736.4Link to Protein Sequence:NP_808404.2Re-query CCDS DB by Nucleotide ID:NM_177736Re-query CCDS DB by Protein ID:NP_808404Link to BLAST:NP_808404.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103630.1 259 Q8R2R5 259 99.6139% 0 1
NP_808404.2 259 Q8R2R5 259 99.6139% 0 1

Chromosomal Locations for CCDS 39478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48568245 48569024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGAGCCTCCTGGAGAGAAGCCAGGAGAGGCTGAGGCGCTGAGCATCACACCCCAGCTGCTGAAGTCCC
ACTCAGGAGAATTTGCCCTGGATTCCATCCTGTTGCTGAAGCTTCGGGGTTTAGGGGTGGTGGACCTGGG
TTGTTTGGGGGAGTGCCTGAACCTTGAGTGGCTTGACCTATCAGGCAATGCACTTACCCACCTGGGCCCA
CTGGCATCCCTGCGCCAGCTGGCTGTGCTCAACGTCTCCAATAATCGGCTTACAGGGCTGGAGCCACTAG
CAGCTTGTGAGAACCTGCAGAGCCTCAATGCTGCTGGTAACCTGCTGACCACTCCTGGTCAGCTGCAGTG
TCTGGCTGGGTTGCAGGCCCTGGAGCACCTGAGGCTCCGGGACCCTTTGGCCCGGCTCAGCAACCCGCTC
TGTGCAAATGCTTCCTACTGGGCTGTGGTCCAAGAGCTACTGCCTGGCCTCAAAGTCATAGATGGGGAAC
GAGTGAGTGGGCGGGGCAGTGAGCTGTACCAGTTATGCCGGGACCTGGACAGTTCCTTGCGCTCCGGCTC
CAGCCCAGGGCCCAGAGCCATCGAGGCCCAGCCATGGGTAGAGCCCGGCTACTGGGAGTCCTGGCCCATC
CGGAGCAGCTCCATTCTGGAGGAGGCCTGCCGACAGTTCCAGGACACACTGCAGGAATGCCTTGACCTGG
ATCGTCAGGCCAGCGATAGCTTGGCCCAGGCCCAGCAGGCTCTCAGCCCTGCAGAAACCACCTCTTCCTT
TGTCTTCTGA

Translation (259 aa):
MEPPGEKPGEAEALSITPQLLKSHSGEFALDSILLLKLRGLGVVDLGCLGECLNLEWLDLSGNALTHLGP
LASLRQLAVLNVSNNRLTGLEPLAACENLQSLNAAGNLLTTPGQLQCLAGLQALEHLRLRDPLARLSNPL
CANASYWAVVQELLPGLKVIDGERVSGRGSELYQLCRDLDSSLRSGSSPGPRAIEAQPWVEPGYWESWPI
RSSSILEEACRQFQDTLQECLDLDRQASDSLAQAQQALSPAETTSSFVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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