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Report for CCDS20121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20121.1 Public Mus musculus 6 Aoc1l3 23 108 98 CCDS HistoryNCBI Gene:243377Re-query CCDS DB by CCDS ID:20121.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037696.5 ENSMUSP00000045221.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037696.5Link to Ensembl Protein Viewer:ENSMUSP00000045221.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000037696Re-query CCDS DB by Protein ID:ENSMUSP00000045221
Original member Current member NCBI NM_172888.3 NP_766476.2 Accepted alive Link to Nucleotide Sequence:NM_172888.3Link to Protein Sequence:NP_766476.2Re-query CCDS DB by Nucleotide ID:NM_172888Re-query CCDS DB by Protein ID:NP_766476Link to BLAST:NP_766476.2

Chromosomal Locations for CCDS 20121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48987060 48988941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48990002 48990278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48990557 48990689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48990930 48991068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48991578 48991609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGAGCCTGGTAGGAAGGACCTTGGTTCTGGGCTGGATGACTACCATCTTGGTGGTACACATGTCAGTGG
CAAAGCACTCCAGGTGGGCACTGAGGACCAAGCCCCAGATGCTGTGGGACTTGAGTGGTGAGGAGCTGGA
GGCTGTGCACAACTTCGTGATGAGCAGCAAGGAGCTAGAGCTGCAGCCATCCACGTTACTGACTTTGGCC
AAGAACTCCGTGTTCCTCATTGAGATGCTGATGCCCAAGAAGTATGAGGTGCTGGCTTTCCTAGATAAAG
GGGCCATGCTTCCTTTACGGGAAGCCCGTGTTCTGATCTACTTTGGTGCCCAGGAGTACCCCAATGTCAC
CGAGTATGCTGTGGGGCCCGTTGAACAGCCCATGTACATGCGAAAACTGAACCGCAAGGGAGGCCAGCAG
CTGTCATGGGCATCCAGACCCATGTCCAAAGTAGAGTCTGCCCTCCTCTTGCATACCCTGAAGACAGCTA
CCAAGCCCTTACAAGAGTTTTTCTTTGATACCACTGGCTTCACACTGCAGGACTGCAATGGTGGCTGCCT
GACCTTTACCAATGTTGGCCCTCGTGCTATGACATTTGGAAAGCGCCATAGCTGGTTTCTTTTGCAACGC
ATTATGAATGACTACTTCCTGCAGCCCACGGGGCTAGAGATCCTTTTGGACCATGGGAGCACAGATGTCC
AGGACTGGATAGTAGAACAAGTCTGGTATAACGGCAAGTTCTACAACAGCCCAGAGGAACTGGCTCAGAA
ATATGCAGATGGAGAAGTGGACATAGTGGTCCTCGAGGACCCACTGCCCAAGACTACAGAGCAGTTTCCA
CAGTTCTCCACCTACAAGCCCTATGCTGAATTCCTTATGCCCATCAGCAAGGGTGGCCCTCGAGTGATCC
AGCTCTATCCTGAATTCCCCATGCCCATCAGCAAGGGTGGCCCTCAAAAGGCCCAGCCTGATCCTAAATT
TCCTATCCCCATCAGCAAAGGTGGCCCTCAAGTGGCCCAGCCCTATCGTGAATTTCCCATGCCCATCAGC
AAGGGTGGCCCTCAAGTGGTCCAGCCTGATCCTAAATTTCCTATCCCGATCAGCAAGGGTGGCCCTCGAG
TGCCCCAGCCCCATGCTAAATTTCCCATGCCCATCAGCAAGGGTGGCCCTCGAGTGGTCCAGCCCAAGGC
TAAATTTCCCATGCCTATCAGCAAGGGGGGCCCTCAGATAGCCCAGCCCCATGTTCCCCACTACAGACTA
AAACACAACACTGTGCTCTATGGAGACTGGAACTTCTTCTTCAAGCTGCACTCTTCTTATGGGCTTCAGC
TCTTTAATGTACATTTTAGAGGTGAACGCATCGCCTATGAGGTTGGTGTGCAAGAGGTTATGGCACTGTA
TAGAGGACACACAGCTGCAGGCAGAAAGACCAAATACATGGATGTGGGCTGGGGCCTAGGAGGTATTACT
CACCAGCTAACTCCTGGCATTGACTGTCCCCATGAAGCCACCTTCCTGGACGCCATCCACTACTATGACA
GTGATGGTCCTGTCCTCTCTCGGCGAGCCCTCTGTATCTTTGAAATGCCCCTTAGGCAGTACTTTAACTC
CAACTTTAGAAGTAGCTTCAGTTCCTATGCCAAGCTGAGTGGACCCATGCTGGTTCTGAGGACAGCATCA
ACAATCCACAATCATGATTACATCTGGGACTTCATCTTCCACTCCAATGGCATGATGGAGGGCAAGATGT
ACGCCACCGGGTATGTTCATGCCACTTTCTACAGCTCAGAAGGGCTGCTCTACCACAGTCGCCTGCACAC
CCACCTACTTGGAAATGTCCACTCCCACCTAGCGCATTACCGCATTGACCTGGATGTGGCAGGTACCAAG
AATAGATTCCAGACACTGAAAATGAGACTGGAAAACATCATGGACCCCTGGAGCCAGCAGGTCAAACCCA
TCCTTGACAAGACCCAGTACTCCTGGGAGCGCCAGGCTGCCTTCCACTTCCGGCAGACTCTGCCCAAGTA
CCTGCTTTTTAGCAACACTGGGAAAAGTGTGTCAGGTCTCAGCCACAGCTACCGCCTGCATGTCCCCTCC
ATGGCTGAGCAAGTGTTACCCCCAGGCTGGCAGACCTCCCCGGCTTTCACGTGGCCCAGGTACCAGTTGG
CAGTGACTAAGTACCAGGAGTCTGAGCGGTTCCACGGTAGCCTTTACAACCAGAACCACCACTGGGCTTA
TCCTATGGTCTTTGAGAACTTCATTCACAACAATGAAAACATTGAAGATGAGGACTTGGTGGCCTGGGTG
ACAGTCGGCCTCTCACACAATCACCATTCTGAGATTGTCCCCAGTGTGGCTACACCAGGGAACTCGGCGG
GATTCTTGCTCCAGCCATTTGATTTCTACAACAGCTTCCGGAGATATACAGCCTCTCCAACTCATGCCCA
GTGTGTGTGCTGA

Translation (820 aa):
MSLVGRTLVLGWMTTILVVHMSVAKHSRWALRTKPQMLWDLSGEELEAVHNFVMSSKELELQPSTLLTLA
KNSVFLIEMLMPKKYEVLAFLDKGAMLPLREARVLIYFGAQEYPNVTEYAVGPVEQPMYMRKLNRKGGQQ
LSWASRPMSKVESALLLHTLKTATKPLQEFFFDTTGFTLQDCNGGCLTFTNVGPRAMTFGKRHSWFLLQR
IMNDYFLQPTGLEILLDHGSTDVQDWIVEQVWYNGKFYNSPEELAQKYADGEVDIVVLEDPLPKTTEQFP
QFSTYKPYAEFLMPISKGGPRVIQLYPEFPMPISKGGPQKAQPDPKFPIPISKGGPQVAQPYREFPMPIS
KGGPQVVQPDPKFPIPISKGGPRVPQPHAKFPMPISKGGPRVVQPKAKFPMPISKGGPQIAQPHVPHYRL
KHNTVLYGDWNFFFKLHSSYGLQLFNVHFRGERIAYEVGVQEVMALYRGHTAAGRKTKYMDVGWGLGGIT
HQLTPGIDCPHEATFLDAIHYYDSDGPVLSRRALCIFEMPLRQYFNSNFRSSFSSYAKLSGPMLVLRTAS
TIHNHDYIWDFIFHSNGMMEGKMYATGYVHATFYSSEGLLYHSRLHTHLLGNVHSHLAHYRIDLDVAGTK
NRFQTLKMRLENIMDPWSQQVKPILDKTQYSWERQAAFHFRQTLPKYLLFSNTGKSVSGLSHSYRLHVPS
MAEQVLPPGWQTSPAFTWPRYQLAVTKYQESERFHGSLYNQNHHWAYPMVFENFIHNNENIEDEDLVAWV
TVGLSHNHHSEIVPSVATPGNSAGFLLQPFDFYNSFRRYTASPTHAQCVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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