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Report for CCDS39597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39597.1 Public Mus musculus 6 Slc6a11 23 108 98 CCDS HistoryNCBI Gene:243616Re-query CCDS DB by CCDS ID:39597.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39597.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032451.8 ENSMUSP00000032451.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032451.8Link to Ensembl Protein Viewer:ENSMUSP00000032451.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032451Re-query CCDS DB by Protein ID:ENSMUSP00000032451
Original member Current member NCBI NM_172890.3 NP_766478.1 Accepted alive Link to Nucleotide Sequence:NM_172890.3Link to Protein Sequence:NP_766478.1Re-query CCDS DB by Nucleotide ID:NM_172890Re-query CCDS DB by Protein ID:NP_766478Link to BLAST:NP_766478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766478.1 627 P31650 627 100% 0 0

Chromosomal Locations for CCDS 39597.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 114131277 114131517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114134599 114134733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114134850 114134990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114138901 114138991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114162041 114162173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114194611 114194745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114225823 114225926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114230037 114230161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114235800 114235912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114238359 114238496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114243866 114243968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114244810 114244910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114245606 114245776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114247588 114247740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGACTGCGGAGCAAGCGCTGCCCCTGGGCAACGGGAAAGCGGCCGAGGAGGCGCGGGGGTCCGAGACGC
TGGGCGGCGGCGGCGGGGGCGCGGCGGGGACGCGCGAGGCGCGCGACAAGGCTGTCCACGAGCGCGGCCA
CTGGAACAACAAGGTGGAGTTCGTGTTGAGCGTAGCTGGAGAGATCATCGGACTGGGCAACGTGTGGCGC
TTTCCCTACCTGTGCTACAAAAACGGCGGAGGGGCATTCCTGATTCCTTACGTGGTGTTTTTCATCTGCT
GCGGAATCCCCGTCTTCTTCCTGGAAACGGCTCTGGGGCAGTTCACGAGCGAGGGTGGCATCACGTGCTG
GAGGAGGGTCTGCCCTTTATTTGAAGGCATTGGCTATGCAACACAGGTGATCGAGGCACACCTCAATGTC
TACTACATCATCATCCTGGCGTGGGCCATCTTCTACCTAAGCAATTGCTTCACCACCGAGCTCCCCTGGG
CCACCTGTGGGCACGAGTGGAACACAGAGAAATGTGTGGAGTTCCAGAAGCTGAACTTCAGCAACTACAG
TCATGTGTCCCTGCAGAATGCCACCTCCCCGGTCATGGAGTTCTGGGAACGCCGGGTCTTGGCTATATCC
GATGGCATTGAGCACATTGGGAACCTCCGTTGGGAACTGGCATTATGTCTCCTGGCGGCCTGGACCATCT
GCTACTTCTGCATATGGAAGGGTACTAAGTCGACTGGAAAGGTCGTGTATGTCACTGCAACCTTCCCCTA
CATCATGCTGCTGATCCTCCTGATCCGAGGGGTCACGTTGCCAGGCGCCTCTGAAGGCATCAAGTTCTAT
CTGTACCCTGACCTCTCCCGGCTCTCTGACCCACAGGTGTGGGTGGACGCTGGGACGCAGATCTTTTTCT
CCTATGCCATCTGCCTGGGCTGCCTAACCGCTCTGGGGAGTTACAACAACTATAACAACAACTGCTACAG
GGACTGCATTATGCTCTGCTGTCTAAACAGTGGCACCAGCTTCGTGGCTGGGTTTGCCATCTTCTCAGTC
CTGGGCTTCATGGCATACGAGCAGGGTGTGCCTATTGCCGAGGTGGCAGAGTCAGGTCCTGGACTGGCTT
TCATCGCCTACCCCAAGGCTGTCACTATGATGCCCCTCTCTCCACTGTGGGCCACCTTGTTCTTCATGAT
GCTCATCTTCCTGGGCCTGGACAGTCAGTTTGTGTGCGTGGAGAGTCTTGTGACAGCCGTGGTAGACATG
TACCCTAAGGTCTTCCGGCGGGGCTACCGGCGAGAACTGCTCATCCTGGCCCTGTCCATCATCTCCTATT
TCCTAGGCCTGGTGATGCTGACCGAGGGAGGCATGTACATCTTCCAGCTTTTTGACTCATACGCCGCCAG
TGGCATGTGCTTGCTCTTTGTGGCCATCTTTGAGTGTGTCTGCATCGGCTGGGTATATGGAAGCAACCGG
TTCTATGACAATATTGAGGATATGATTGGTTACCGGCCACTGTCACTCATCAAGTGGTGCTGGAAAGTCG
TGACCCCTGGGATCTGTGCGGGCATCTTCATCTTCTTTCTGGTCAAGTACAAACCGCTCAAGTACAACAA
TGTGTACACATATCCTGCTTGGGGCTACGGCATCGGCTGGCTCATGGCTCTGTCCTCCATGCTGTGTATC
CCACTCTGGATCTTCATTAAGCTGTGGAAGACAGAGGGCACACTGCCCGAGAAATTACAGAAGTTGACAG
TCCCCAGCGCCGATCTGAAAATGCGGGGCAAGCTTGGGGCCAGCCCACGGACGGTGACCGTTAATGACTG
TGAGGCCAAGGTCAAGGGCGACGGCACCATCTCTGCCATCACAGAGAAGGAGACACACTTCTGA

Translation (627 aa):
MTAEQALPLGNGKAAEEARGSETLGGGGGGAAGTREARDKAVHERGHWNNKVEFVLSVAGEIIGLGNVWR
FPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETALGQFTSEGGITCWRRVCPLFEGIGYATQVIEAHLNV
YYIIILAWAIFYLSNCFTTELPWATCGHEWNTEKCVEFQKLNFSNYSHVSLQNATSPVMEFWERRVLAIS
DGIEHIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIMLLILLIRGVTLPGASEGIKFY
LYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNNNCYRDCIMLCCLNSGTSFVAGFAIFSV
LGFMAYEQGVPIAEVAESGPGLAFIAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVDM
YPKVFRRGYRRELLILALSIISYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECVCIGWVYGSNR
FYDNIEDMIGYRPLSLIKWCWKVVTPGICAGIFIFFLVKYKPLKYNNVYTYPAWGYGIGWLMALSSMLCI
PLWIFIKLWKTEGTLPEKLQKLTVPSADLKMRGKLGASPRTVTVNDCEAKVKGDGTISAITEKETHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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