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Report for CCDS80743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80743.1 Public Mus musculus 7 Fsd2 23 108 98 CCDS HistoryNCBI Gene:244091Re-query CCDS DB by CCDS ID:80743.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042318.5 ENSMUSP00000047775.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042318.5Link to Ensembl Protein Viewer:ENSMUSP00000047775.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042318Re-query CCDS DB by Protein ID:ENSMUSP00000047775
Original member Current member NCBI NM_172904.2 NP_766492.2 Accepted alive Link to Nucleotide Sequence:NM_172904.2Link to Protein Sequence:NP_766492.2Re-query CCDS DB by Nucleotide ID:NM_172904Re-query CCDS DB by Protein ID:NP_766492Link to BLAST:NP_766492.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766492.2 716 Q8BZ52 716 100% 0 0

Chromosomal Locations for CCDS 80743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 81534996 81535248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81537131 81537307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81540312 81540444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81542040 81542173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81544960 81545110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81545857 81545991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81548847 81549002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81549904 81550025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81551897 81551919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81552963 81553193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81559093 81559188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 81559553 81560092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGAGGAGGAAGCAGAGGAGGAATCCGGGCTGGGCAGGTCGGCAGCCCCCAAAGACTTCCACTTTTATC
ACATGGACCTGTATGACTCTGAAGATAGACTGCAGCTCTTCCCAGGAGACAGCAGCAGAATCAGGAGGGA
AGTAACCCAAGCCGAAGATGACCGTGAATTAGGGGATGAATTTGTGGATGAACACAGACTGGGGACTCTG
GGGTATCCTTCTTACGGGATGAGGAGGAGGGACCCAGGCAGGGAGCCGAGAGACTGGGGTGAGGCAGCTG
AGGCGGAGGACCTGGGCTACGGAGGAGGGCAAGGCCCTCTTGACCAGTGCCAAGACCTCCGGGAAGCCTA
CAGGTACACACATGGCCGTGCCAGCGAGGAGTATGAATGCTATGTCATCCCAGAGGAGGAAGACGAAGAA
GAGCCTGCTGATGTCTTCTGCATCACTTGCAAAACTCCAGTAAGAACTGTTGAGAAGGATTTTGATACAC
ACAAGGAACACGAAGTAACCCCAATCAGCAAAGCTCTGGAACATGCCAAGGATGAGGTTCACAAAAATAT
GTGCAAATTGGAACAGCAGATAATTGAGATGGAAAATTTCGCTAGCCACCTGGAAGAAGTGTTCATTACT
GTGGAGGAGAATTTTGGAAGACAGGAACAAAACTTTGAGTGCCATTACAATGGGATCTTGGAAACCCTCG
CTCAAAAGTATGAAGAAAAAATTCAAGCTCTGGGGGAGAAAAAGAGAGAGAAACTGGAAGCCTTATACGG
ACAACTGGTCAGCTGTGGAGAGAACCTCGATGCCTGCAGGGAGCTGATGGAAACCGTAGAGGAGATGTGT
CATGAGGAAAAGGTGGAGTTCTTAAAGGATGCAGTGGCTATGACTGACAGACTGGGGAAATTCCTGAAAA
CCAAAACTGATGTGGAGCTCTCTGCACAACCTGAGTTTGAAGACCAGACCTTGGACTTCTCTGATGTGGA
GCAGCTGATGGACGCCATCAATACCATTCCAGCGCCCTCTGCTCCAGTGATAAATCCCCAGGCACCCAAC
TCCGCCACCGGCTCCTCAGTGCGTGTATGCTGGAGCTTATATTCTGACGACACCGTGGAGAGCTACCAGC
TGTCCTATAGGCCGGTGCAGGACAGCTCATCTGGCAAGGACCGAGCAGAATTCACCATGATGGTCAAAGA
AACATATTGCTCAGTGACAAATCTTGAGCCAAATACTCAGTATGAGTTTTGGGTCATAGCTCAGAACAGG
ACTGGCCCCAGCCCCTGCAGTGAGCACGCAGTGTATATGACAGCCCCCTCTCCCCCCTCTATAAAAACCG
AGGCAATCAGAAGCTGTGAAGAGGCTGTGCTGATTTGCTGGGAGTCTGGGAACCTGAATCCGGTGGACTC
CTACACGGTGGAGCTAATCCAGGCAGAGACGCCAGAAGCCTCGGGGGTAACTGAATCTGTCGTAGGCATC
CCAACCTGTGAATCCCTGATACAGCTGCAGCCTAGACACAGCTATACCATCTATGTGCGAGCCCTCAACG
TGGGAGGCACCAGTGCCAGAAGTGAGCCTGCTACAGTGCACACCACAGGAAGCTACTTCCAATTGAACAA
AGACACCTGCCATCCCTGGCTGACCATTTCTGAAGATGGGTTTACGGTAGTTCGAAGTGAGAAGAAAAGT
TTCAGAAAGGAGCTGCCGCCGAGCAAGACGCAATTTACCAGGTGTGTTGCTGTCATGGGGAATCTGATTC
CGGTCCGAGGGCGCCATTACTGGGAAGTGGAGGTGGCTGAGCATTTGGACTACACTGTGGGTGTGGCCTG
TGAAGATGTCCCTAAGCAGGAAGACCTGGGAGCAAACTCCTTGTCCTGGTGCATGAGGCATACATTTGTT
TCCAAAAGGCACCGGTATGAGTTTCTGCACAACAAGATGACTCCAGACATCAGGATCACAGTTGCTCCGA
GGAAGATTGGCGTGCTGCTGGACTATGAGAACGCCAAGCTGTCCTTTTTCAATGTGGACATTGCTCAGCA
CCTGTACACATTTAGCTGTCAGCTCCACCAGTTTGTGCATCCCTGCTTTTCCCTGGAAAAGTCTGGATGC
CTAAAGATCTGCAATGGCATTTCAATGCCAAAGCATGTCACTTTCTTTTAG

Translation (716 aa):
MEEEAEEESGLGRSAAPKDFHFYHMDLYDSEDRLQLFPGDSSRIRREVTQAEDDRELGDEFVDEHRLGTL
GYPSYGMRRRDPGREPRDWGEAAEAEDLGYGGGQGPLDQCQDLREAYRYTHGRASEEYECYVIPEEEDEE
EPADVFCITCKTPVRTVEKDFDTHKEHEVTPISKALEHAKDEVHKNMCKLEQQIIEMENFASHLEEVFIT
VEENFGRQEQNFECHYNGILETLAQKYEEKIQALGEKKREKLEALYGQLVSCGENLDACRELMETVEEMC
HEEKVEFLKDAVAMTDRLGKFLKTKTDVELSAQPEFEDQTLDFSDVEQLMDAINTIPAPSAPVINPQAPN
SATGSSVRVCWSLYSDDTVESYQLSYRPVQDSSSGKDRAEFTMMVKETYCSVTNLEPNTQYEFWVIAQNR
TGPSPCSEHAVYMTAPSPPSIKTEAIRSCEEAVLICWESGNLNPVDSYTVELIQAETPEASGVTESVVGI
PTCESLIQLQPRHSYTIYVRALNVGGTSARSEPATVHTTGSYFQLNKDTCHPWLTISEDGFTVVRSEKKS
FRKELPPSKTQFTRCVAVMGNLIPVRGRHYWEVEVAEHLDYTVGVACEDVPKQEDLGANSLSWCMRHTFV
SKRHRYEFLHNKMTPDIRITVAPRKIGVLLDYENAKLSFFNVDIAQHLYTFSCQLHQFVHPCFSLEKSGC
LKICNGISMPKHVTFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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