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Report for CCDS40174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40174.1 Public Mus musculus 7 Scart1 23 108 98 CCDS HistoryNCBI Gene:244233Re-query CCDS DB by CCDS ID:40174.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084460.6 ENSMUSP00000081497.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084460.6Link to Ensembl Protein Viewer:ENSMUSP00000081497.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000084460Re-query CCDS DB by Protein ID:ENSMUSP00000081497
Original member Current member EBI ENSMUST00000209637.1 ENSMUSP00000147699.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209637.1Link to Ensembl Protein Viewer:ENSMUSP00000147699.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209637Re-query CCDS DB by Protein ID:ENSMUSP00000147699
Original member Current member NCBI NM_172909.4 NP_766497.3 Accepted alive Link to Nucleotide Sequence:NM_172909.4Link to Protein Sequence:NP_766497.3Re-query CCDS DB by Nucleotide ID:NM_172909Re-query CCDS DB by Protein ID:NP_766497Link to BLAST:NP_766497.3

Chromosomal Locations for CCDS 40174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140218565 140218628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140220372 140220704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140222157 140222450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140223216 140223524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140223891 140224196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140224320 140224637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140224710 140225024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140227857 140228174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140228362 140228430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140228504 140228818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140229035 140229058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140229745 140229882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140230300 140230466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2970 nt):
ATGAGGACAACGCTCTGGCCTCTGAGTTTAGGGTCTCTTCTCACTCTCGGGGCAGCTCTCACTGGCACAT
CATCTGAAGGTGACCAAGGCAATCTGAGGCTGGCACACAGACAGAGCACATGTGACGGAGTGGTGCTGGT
TCGACACCAAGGGGAATGGGGTCACCTGTGCAACCTGGAGTGGACACTGGCAGAGGCCTCTGTGGTGTGT
AGACAGCTGGGCTGTGGCCCTGCTGTGGGTGCTCCCAAATATGTACCCCTGCCTGGAGAGATGGTCCGGC
CCTGGCTGCACAATGTATCCTGTTGGGGCAATGAGTCCTCTCTCTGGGAGTGTAGCCTTGGGGCATGGAG
TCAGCGTGCTTGCCCCCATGAGTGGGTGGTGGTGGCTCTCTGTGCAAATGGCACCTTCCGGGAGATCCGG
CTGGTGAAGGGCCACAGTCCCTGTGCAGGACTCCCTGAGATCATGAATGTGAATGGGGTGGACCGCCTCT
GTGGCCTGCATGTGGAGGAGGCCACAGTGTTTTGCCGTGAGCTGCAGTGTGGCCATGCACTCCAGGCCCC
CCGTCAAGATGTGGGCGTCAGTAAGTACATGACCTGCAAGGGCACCGAGTCCACCATCCGCAACTGCAGA
CTCAACAACAAGCTACGCGGTGGCTGCAACCTGCTGCTGGATGCAGAAGTCATCTGCTCAGGACACGTGG
AGGCCCGGCTAGTGGGTGGAGAACATTCCTGTGCTGGACGCCTGGAGGTTCTTCGGGGACTGACCTGGGG
TACCATCTGCCATGCTGATCTGGACTTGCCCACAGCCCATGTGGTGTGCCGGGAGTTAGGGTGTGGTATA
GCTGTGTCTACACTTGGGGGTGCTCAGTTTGGCCAGGGCTCAGGACCTGTGTGGCTAGAAGCCTTCCGCT
GTGTGGGGAATGAATCGCTGCTATTCCACTGCCCCCGGGAGCCCGGTCACCACTGTGGCCACGAGCAGGA
TGCTGCACTCACCTGCTCAGAGTTCCGGCTGGTCAATGGCAGCAGTGACTGTGAAGGCCGTGTGGAACTC
CAAGTGCAAGGGACCTGGGCACCTGTCTGTGCTGCCAACTGGGACCTAGCAGATGCCATGGTTCTCTGTC
ACCAACTCAACTGTGGCAATGCAGTATCTGTACCTCCAGGAGGACATTTTGGTGATGGGGATGATCTCAT
CTGGCCAGACATATTTCATTGTGTGGGGACAGAGCCTCATTTGCTTCACTGTGCAGCAAGCACCCTGGGG
GCCCATGGTTGTGTCCTGGGGAATACAGCTTCTACCATCTGTTCAGGACTCCAAGACATCCTGCGGCTGA
GAGATGGACAGAGCTACTGTGATGGCCGTGTAGAGATTTCCCTGGATGGTTCATGGGGCCGCGTATTGGA
TGACGCCTGGGACCTGCATGGCGCCAGCGTGGTGTGCCGGCAGCTAGGGTGTGGAGAGGCACAGCGAGCC
TATGATGCTCCAGCTCCTATTTTCAGGAGAGTCCCTGTGGGGCTGAGCCAGGTGCGCTGCCTGGGCTCTG
AGACTCGCCTGGTGCATTGCAATGTTTCTACGTCCCTGCTGGTGCCTGCTGGGACCTTGCGTGACGCAGG
AGTGGTGTGCTCCGGGAGCCTGCGCGTGAGGCTGGCTGCGGGCCCAGGTCGATGTGCTGGGCGTGTGGAG
TTATTCTATCAGGGCTCCTGGGGCACTGTGTGTGATGATGCCTGGGACCTACAGGATGCACAAGTGGTCT
GTAGGCAGCTGGACTGTGGCCACGCCCTCAGTGCTCCCCGGAATGCTCACTTTGGGGCGGGGACTGGGCA
CATCTGGATGGATGAGCTGCACTGCTTGGGAAATGAGTCTTCGTTGTGGAAGTGCCAGTCAGGAAGCTGG
GGCCAACATGACTGCAGACACAAGGAGGATGCTGGAGTGTTCTGCTCAGAATCTGTGGCTCTGAGGCTTC
GAGGTGGCACTAGTGGCTGCGTTGGATGGCTGGACGTGCTCTACAATGGGTCCTGGGGTGCTGTGTGCAG
CAATGCACTCAGAGACATCTCCTTGAGCATCATCTGCAGACAGCTGGGATGTGGGGACCAGGGCTGGCTG
GAGAACAGGCCTTCTTCTGGAGCTGGCCTGGGAATCTCCTGGGTGGATAATATCAAGTGTCGAAATCTAC
ACAATGCCACCCTGTGGCAATGCCCTTCTGCCCCATGGAACCCGCACTCCTGCACCCAGGAGGAGGAGGT
CTGGATTAACTGTGAAGGAACACCACAGATAGCTCTCCAGGACCCTGCACAGACCCCAAACTGCTCTTCT
CCATTTGGCTGCCTAGAGAACAGTGTTCTGCGTGTGCTTGGGGGTGAGGATGGCTGTTCCGGGCGTGTGG
AGCTCTGGCACGCAGGCTCATGGGGCACAGTGTGTGACGACTCCTGGGACCTGGTGGATGCCGAGGTTGT
GTGCCGGCAACTGGGCTGCGGCCAGGCCTTGGCTGCTTTAGGAGAGGCTTCCTTTGGCCCTGGTGTGGGG
CCTGTGTGGCTGGATGAGGTCGAGTGCCTTGGCAGTGAGGTGACCCTGGAGGCCTGCCAGGCTGAGCCCT
GGGGACATGGAGACTGCACGCACAAGGAGGATGCAGGTGTTCGCTGTGCGGGTGTCTCCACGACCACTGC
ATTGTCTCCTTCCCTGACCCCTCCATCGGTTGCCGAGGTCTGGAAACTGTCGGAGATTGCCTGCTTGGTG
CTTGGCTGCCTTCTGGGCATTGTCTTCCTGGTTATGATTGCTCAGTGGTGCCACATCAGAGATGCTAGCA
TGGGTGCTGGCATGTTGGGGCATCTACAGTCAGAAGGTATCTATGAGGACATTGAAGTTGACCCTGTGCC
AAAGAAGGAGGAGAACACAGTATCCAGGCTACTGATGCTGGAAGAGGGTTATGATGATGCTGAAGAGCCT
GAGGATCAGCCCACAGAGAATGACGAGTAG

Translation (989 aa):
MRTTLWPLSLGSLLTLGAALTGTSSEGDQGNLRLAHRQSTCDGVVLVRHQGEWGHLCNLEWTLAEASVVC
RQLGCGPAVGAPKYVPLPGEMVRPWLHNVSCWGNESSLWECSLGAWSQRACPHEWVVVALCANGTFREIR
LVKGHSPCAGLPEIMNVNGVDRLCGLHVEEATVFCRELQCGHALQAPRQDVGVSKYMTCKGTESTIRNCR
LNNKLRGGCNLLLDAEVICSGHVEARLVGGEHSCAGRLEVLRGLTWGTICHADLDLPTAHVVCRELGCGI
AVSTLGGAQFGQGSGPVWLEAFRCVGNESLLFHCPREPGHHCGHEQDAALTCSEFRLVNGSSDCEGRVEL
QVQGTWAPVCAANWDLADAMVLCHQLNCGNAVSVPPGGHFGDGDDLIWPDIFHCVGTEPHLLHCAASTLG
AHGCVLGNTASTICSGLQDILRLRDGQSYCDGRVEISLDGSWGRVLDDAWDLHGASVVCRQLGCGEAQRA
YDAPAPIFRRVPVGLSQVRCLGSETRLVHCNVSTSLLVPAGTLRDAGVVCSGSLRVRLAAGPGRCAGRVE
LFYQGSWGTVCDDAWDLQDAQVVCRQLDCGHALSAPRNAHFGAGTGHIWMDELHCLGNESSLWKCQSGSW
GQHDCRHKEDAGVFCSESVALRLRGGTSGCVGWLDVLYNGSWGAVCSNALRDISLSIICRQLGCGDQGWL
ENRPSSGAGLGISWVDNIKCRNLHNATLWQCPSAPWNPHSCTQEEEVWINCEGTPQIALQDPAQTPNCSS
PFGCLENSVLRVLGGEDGCSGRVELWHAGSWGTVCDDSWDLVDAEVVCRQLGCGQALAALGEASFGPGVG
PVWLDEVECLGSEVTLEACQAEPWGHGDCTHKEDAGVRCAGVSTTTALSPSLTPPSVAEVWKLSEIACLV
LGCLLGIVFLVMIAQWCHIRDASMGAGMLGHLQSEGIYEDIEVDPVPKKEENTVSRLLMLEEGYDDAEEP
EDQPTENDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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