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Report for CCDS22450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22450.1 Public Mus musculus 8 Elmod2 23 108 98 CCDS HistoryNCBI Gene:244548Re-query CCDS DB by CCDS ID:22450.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053902.3 ENSMUSP00000052287.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053902.3Link to Ensembl Protein Viewer:ENSMUSP00000052287.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053902Re-query CCDS DB by Protein ID:ENSMUSP00000052287
Original member Current member EBI ENSMUST00000177594.7 ENSMUSP00000137044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177594.7Link to Ensembl Protein Viewer:ENSMUSP00000137044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177594Re-query CCDS DB by Protein ID:ENSMUSP00000137044
Original member Current member NCBI NM_001170691.1 NP_001164162.1 Accepted alive Link to Nucleotide Sequence:NM_001170691.1Link to Protein Sequence:NP_001164162.1Re-query CCDS DB by Nucleotide ID:NM_001170691Re-query CCDS DB by Protein ID:NP_001164162Link to BLAST:NP_001164162.1
Original member Current member NCBI NM_178736.5 NP_848851.3 Accepted alive Link to Nucleotide Sequence:NM_178736.5Link to Protein Sequence:NP_848851.3Re-query CCDS DB by Nucleotide ID:NM_178736Re-query CCDS DB by Protein ID:NP_848851Link to BLAST:NP_848851.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164162.1 293 Q8BGF6 293 100% 0 0
NP_848851.3 293 Q8BGF6 293 100% 0 0

Chromosomal Locations for CCDS 22450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83316316 83316461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83316801 83316934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83317731 83317799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83319414 83319547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83321433 83321562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83322667 83322764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83329112 83329140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83331111 83331252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGTTCGTGTCTCTGTGGGAGTTTTTCTATGGACACTTTTTCCGATTTTGGATGAAATGGCTCTTACGGC
AGATGACTGGGAAATGTGAATTGCAGCGAATTTTTGACACCTATGGAGGGGCACAGAGGACCTACAGAAT
AGAAAATTCCTTGACATATTCCAAGAATAAGGTCCTACAGAATGCAACACGAGTTGCCCAGAGTGAACTG
GACAGGTGTATAGCGAACATCATGAAGGAAAAGAACATCTGCTCCGAGAAGGACACAAGTTTTCAGATCT
GCATGCGGACGTGCTTACTGCAGATAACTGGCTATAAACAGCTCTACCACGATGTAGAAAATGTGAGGAA
AAAGCCCTATGACTCTGCCAATGCACAGCACGAGAAGATGCTCCTCAAGCTTTGGAGTCTTCTGATGCCA
ACGAAAAAGTTGACGGCCCGGATCTCCAAGCAGTGGGCAGACATTGGTTTCCAAGGTGACGATCCCAAAA
CAGACTTCAGAGGCATGGGCATACTCGGACTGATCAATCTCGTGTATTTCAGTGAAAACTACACCAGCGA
AGCGCATCAGATTCTCTCCCGCTCAAATCACCCCAAATTAGGGTATTCTTATGCAATAGTTGGAATCAAC
CTTACAGAGATGGCTTATAGCTTACTGAAGAGCGAGGCCCTGAAGCTTCACCTCTACAACTTTGTCCCTG
GGGTACCAACGATGGAGCACTTCCACCAGTTTTACTGTTACCTTGTCTATGAATTTGACAAGTTTTGGCT
TGAGGAAGAGCCAGAAAGCATTATGTACTTCAACTTGTACAGAGAGAAGTTTCACGAGCGGATCAAAGGA
CTCTTGATGGATTGCAATGCTGTGCTCACTTTGAAAACATGA

Translation (293 aa):
MFVSLWEFFYGHFFRFWMKWLLRQMTGKCELQRIFDTYGGAQRTYRIENSLTYSKNKVLQNATRVAQSEL
DRCIANIMKEKNICSEKDTSFQICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMP
TKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLGYSYAIVGIN
LTEMAYSLLKSEALKLHLYNFVPGVPTMEHFHQFYCYLVYEFDKFWLEEEPESIMYFNLYREKFHERIKG
LLMDCNAVLTLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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