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Report for CCDS24926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24926.1 Public Mus musculus 11 Elp5 23 108 98 CCDS HistoryNCBI Gene:54351Re-query CCDS DB by CCDS ID:24926.1Re-query CCDS DB by GeneID:54351See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24926.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108594.7 ENSMUSP00000104235.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108594.7Link to Ensembl Protein Viewer:ENSMUSP00000104235.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108594Re-query CCDS DB by Protein ID:ENSMUSP00000104235
Original member Current member NCBI NM_018740.2 NP_061210.2 Accepted alive Link to Nucleotide Sequence:NM_018740.2Link to Protein Sequence:NP_061210.2Re-query CCDS DB by Nucleotide ID:NM_018740Re-query CCDS DB by Protein ID:NP_061210Link to BLAST:NP_061210.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061210.2 300 Q99L85 300 100% 0 0

Chromosomal Locations for CCDS 24926.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69968426 69968540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69969096 69969196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69969493 69969588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69970561 69970742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69975040 69975260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69979830 69979910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69979999 69980059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69980214 69980259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGCTGGACTCGTTGTTGGCCATCGGTGGTTTGGTGCTTTTGCGAGATTCCGTGGAGTGGGAAGGGCGTA
GTCTCCTGAAGGCTCTTATCAAGAAATCTGCACTTCGTGGGGAGCAGGTCCACGTTCTGGGCTGTGAAGT
GAGCGAAGAAGAGTTTCGCGAAGGTTTCGACTCTGATGTCAACAGCCGCCTGGTTTACCATGACCTCTTC
AGAGACCCTCTTAACTGGTCAAAGCCTGGAGAAGCTGTCCCTGAAGGTCCTCTAAAAGCCTTGAGGTCCA
TGTGCAAAAGGACAGACCATGGCTCAGTCACCATTGCCCTTGACTCTCTCAGCTGGCTGCTGTGTCACAT
TCCCTGTGTTACACTCTGTCAAGCCCTACATGCTCTGAGCCAGCAAAATGGAGACCCAGGTGATAACTCC
CTAGTAGAGCAGGTGCGTGTCCTGGGCCTCCTACATGAAGAGCTTCATGGCCCAGGCTCCATGGGAGCAC
TGAACACCCTTGCTCACACAGAGGTGACTCTGAGTGGTAAAGTGGACCAGACCTCAGCCTCCATCCTCTG
TCGAAGGCCCCAACAACGTGCAACTTACCAGACTTGGTGGTTCTCCGTTCTTCCTGACTTCAGCCTGACT
CTCCATGAAGGGCTTCCCCTCCGTTCTGAGCTACACCCGGATCATCACACAACCCAGGTGGATCCCACTG
CTCATTTGACCTTTAACCTTCACTTATCCAAGAAAGAAAGAGAAGCCAGAGACAGCCTCACTCTGCCTTT
CCAGTTCAGCTCTGAAAAACAGAAAGCTCTGCTGCATCCGGTACCCAGCCGGACCACTGGCCACATCTTC
TATGAGCCAGATGCTTTTGATGATGTGGACCCAGAAGACCCAGATGATGACCTAGATATTTGA

Translation (300 aa):
MLDSLLAIGGLVLLRDSVEWEGRSLLKALIKKSALRGEQVHVLGCEVSEEEFREGFDSDVNSRLVYHDLF
RDPLNWSKPGEAVPEGPLKALRSMCKRTDHGSVTIALDSLSWLLCHIPCVTLCQALHALSQQNGDPGDNS
LVEQVRVLGLLHEELHGPGSMGALNTLAHTEVTLSGKVDQTSASILCRRPQQRATYQTWWFSVLPDFSLT
LHEGLPLRSELHPDHHTTQVDPTAHLTFNLHLSKKEREARDSLTLPFQFSSEKQKALLHPVPSRTTGHIF
YEPDAFDDVDPEDPDDDLDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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