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Report for CCDS23627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23627.1 Public Mus musculus 9 Myrip 23 108 98 CCDS HistoryNCBI Gene:245049Re-query CCDS DB by CCDS ID:23627.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048121.12 ENSMUSP00000046891.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048121.12Link to Ensembl Protein Viewer:ENSMUSP00000046891.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048121Re-query CCDS DB by Protein ID:ENSMUSP00000046891
Original member Current member NCBI NM_144557.5 NP_653140.1 Accepted alive Link to Nucleotide Sequence:NM_144557.5Link to Protein Sequence:NP_653140.1Re-query CCDS DB by Nucleotide ID:NM_144557Re-query CCDS DB by Protein ID:NP_653140Link to BLAST:NP_653140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653140.1 856 Q8K3I4 856 100% 0 0

Chromosomal Locations for CCDS 23627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 120335631 120335740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120388112 120388333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120417140 120417276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120419651 120419731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120422180 120422277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120422461 120422541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120424592 120424738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120427508 120427661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120432353 120432978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120441342 120441581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120453527 120453721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120461408 120461569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120464694 120464798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120464901 120464961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120467446 120467564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 120472772 120472804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGGGGAGGAAGCTGGACCTGTCGGGTCTGACCGACGATGAGACCGAGCATGTTCTCCAAGTGGTGCAGA
GAGACTTCAATCTTCGCAAAAAGGAGGAGGACCGGCTAAGTGAGATGAAGCAGAGGCTGGCCGAGGAGAA
CAGCAAGTGCAGCATCCTCTCGAAGCACCAGAAGTTCGTGGAGCGCTGCTGCATGCGGTGCTGCTCGCCC
TTCACCTTCCTGGTCAACGCCAGGCGCCGCTGCGGGGAATGCAAGTTCAGCGTCTGCAAGAGCTGCTGCT
CCTACCAGAAGCACGAGAAGCTATGGGTTTGCTGTGTCTGCCAGCAAGCCAGGCTTCTGAGGACACAGTC
TCTGGAGTGGTTCTACAACAATGTGAAAAGCCGCTTCAAGCGCTTTGGCAGTGCCAAGGTCCTGAAGAAC
CTGTACAGAAAACACCGTCTGGAGAGCGGTGCCTGCTTCGACATCCTAGGAGGAGGATTGTTTGAACCAA
ACCTGGAGAATGAAGGGAGCATTTCAGGAAGTGACTCCACGTTCTACAGGCAGTCAGAAGGGCACAGCAT
GATGGACACCTTGGCTGTGGCCCTACGAGTGGCAGAAGAGGCCATCGAGGAGGCCATTTCCAAAGCAGAA
TCCCATGGGGACAGCCTGGACAAACAGAACGAGGCCAGCTACCTGCGGGACCACAAGCAAGAGCTAACTG
AGGAGCTGGCCGGCACCATCCTGCAGAGGATTATAAGAAAGCAGAAGGATAAAGCTGAGCTGCGAGCTGA
GGAGGAGGAGCCAGAGTGGCCACGGTCCCAGAGTGGCAGTGTGAAGGCCAGGGGTGAGGGGACCACGGCC
CCTCCAGGACGACACAAAGCACGTGCCACCTTCAGGCGGTCCCAGTCTGCATTCTCCTTCACTATGGAAG
ATGCTCTGAAGTCTGGTTCAGCAGAGGCTGCACCAAGGTCACCCAAGGACCGCGCCCAGCGTCTGCTGGA
GGAGGCCGCTCTGCCCAGCTGGAGGAGCATGGATGGACTGGACGGAACAAACCTGGCCCCACTTTTGCAG
AGCCCCGATGGGAACTGGATGACCTTGAAGGACGGTAGTAGACAGCCCCCAACCCGCCTGCTGACCAAAC
CGAAGAGTGGGACCTTTCAGGCCCTGGAGGTGGCGTCCAGTGTGACGTCTGCCTATGATGAGATCGGTTC
CGACAGTGAGGAAGACTTTGATTACAGCGAAGCCTTGAGTAAGCTGTGCCCACCGTCCCAGAGCAGGCTC
AAGCAACCCCAGCCTCAGCCTACACAGGCCCAGAGTTCTGGCCAAGGTCCCTTAGCCACCTCTCCCTCAA
ACCCTGAGGCCATGTGCTCGGATTCAGAGACATCTTCCACCAGCTCATCTCGGGAAGCTGGCTGCCGGGC
TAAGCTGTCCTGGCTGCAGAGGAAGGCCCCCAAGAACCCCGCAGTGGAGAAGATGCCCCTCCAGGGAGAA
CTGGACGTCAATTTCAACCCTCAGGCAGCCGGTGGAGAGACTTCCGACAGTAGCGATCCAGAGGAGACCC
TCCGCACTGCAGAGCGCCGGGCCAGGAGGTGGAGAAGGGCACGAGTGGGCCCCGAGGAGTCAAACAGGGG
TCTGCCTTCACCTGGTGCCCATCCACGGGCACTGCACACGGCTCAGGTGTCAGACAACGTGTCAGAGACT
GACATCAGCAACGAGACTCAGAATTCCCGGTCCAGCACGGACTCAGTAGAGGAGAAGCTGAGAAATAGAC
TGTATGAGTTAGCCATGAAAATGAGCGAAAAGGAGACTTCTTCTGGGGAGGACCAGGAGTCCGAGTCCAA
GGCGGAACCTAAGAACCAGAAGGGAAGTCTCTCTTCTGAGGAGAACAACCAGGGTGTCCAGGAGGAGCTG
AAGAAGAAGTGTTCTGCTGTTTCTCTCTGCAACATCTCCACAGAAGTCCTGAAGGTCATCAATGCTACCG
AGGAGTTGATCGCAGAGTCTGCAGGGCCCTGGGAGATCCCCCCAGTCTCCACTGACAGAGAAAACGGGAT
GTTTCCTCTTGGGACAGACCAAGTGAGACTGGACAAGCAGCTGACGTCCTTGGAAGAAAACGTGTACCTG
GCAGCGGGCACCGTGTATGGGCTGGAGGGCCAGCTGAGTGAGCTGGAAGACGCTGCCCGCTGCATCCACA
GCAGCACTGGCGAGACGGAGCTGGCAGACCTGGAGGACCAGGTGGCTGCAGCTGCAGCCCAGGTGCACCA
CGCCGAACTCCAGATCTCGGACATCGAGAGCCGCATTTCAGCCCTGACCATCGCTGGCTTAAACATAGCA
CCGTGTGTGCGTCTCACACGAAGACGGGACCAGAAGCAAAGGAGCCAGGTACAAACTATAGACACGTCGA
GGCAGCAGAGGAGGAAACTGCCTGCCCCTCCTGTGAAAGCTGAAAAAATCGAAGCATCTTCCGTGACCCC
CATTAAGACATTCAACCGCAACTTCCTTCTCCAAGGCTCCTCCACAAACAGGCCCACAGCAAGTACCGGT
GACACCAAGGACTTGATGGAGCCTGATCTGGAGTCAGCTGTGATGTACTAA

Translation (856 aa):
MGRKLDLSGLTDDETEHVLQVVQRDFNLRKKEEDRLSEMKQRLAEENSKCSILSKHQKFVERCCMRCCSP
FTFLVNARRRCGECKFSVCKSCCSYQKHEKLWVCCVCQQARLLRTQSLEWFYNNVKSRFKRFGSAKVLKN
LYRKHRLESGACFDILGGGLFEPNLENEGSISGSDSTFYRQSEGHSMMDTLAVALRVAEEAIEEAISKAE
SHGDSLDKQNEASYLRDHKQELTEELAGTILQRIIRKQKDKAELRAEEEEPEWPRSQSGSVKARGEGTTA
PPGRHKARATFRRSQSAFSFTMEDALKSGSAEAAPRSPKDRAQRLLEEAALPSWRSMDGLDGTNLAPLLQ
SPDGNWMTLKDGSRQPPTRLLTKPKSGTFQALEVASSVTSAYDEIGSDSEEDFDYSEALSKLCPPSQSRL
KQPQPQPTQAQSSGQGPLATSPSNPEAMCSDSETSSTSSSREAGCRAKLSWLQRKAPKNPAVEKMPLQGE
LDVNFNPQAAGGETSDSSDPEETLRTAERRARRWRRARVGPEESNRGLPSPGAHPRALHTAQVSDNVSET
DISNETQNSRSSTDSVEEKLRNRLYELAMKMSEKETSSGEDQESESKAEPKNQKGSLSSEENNQGVQEEL
KKKCSAVSLCNISTEVLKVINATEELIAESAGPWEIPPVSTDRENGMFPLGTDQVRLDKQLTSLEENVYL
AAGTVYGLEGQLSELEDAARCIHSSTGETELADLEDQVAAAAAQVHHAELQISDIESRISALTIAGLNIA
PCVRLTRRRDQKQRSQVQTIDTSRQQRRKLPAPPVKAEKIEASSVTPIKTFNRNFLLQGSSTNRPTASTG
DTKDLMEPDLESAVMY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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