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Report for CCDS36144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36144.1 Public Mus musculus 11 9930111J21Rik2 23 108 98 CCDS HistoryNCBI Gene:245240Re-query CCDS DB by CCDS ID:36144.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36144.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093152.1 ENSMUSP00000090839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093152.1Link to Ensembl Protein Viewer:ENSMUSP00000090839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000093152Re-query CCDS DB by Protein ID:ENSMUSP00000090839
Original member Current member NCBI NM_173434.1 NP_775610.1 Accepted alive Link to Nucleotide Sequence:NM_173434.1Link to Protein Sequence:NP_775610.1Re-query CCDS DB by Nucleotide ID:NM_173434Re-query CCDS DB by Protein ID:NP_775610Link to BLAST:NP_775610.1

Chromosomal Locations for CCDS 36144.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49038392 49039795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGGGTCAGACTTCCTCTTCTACACCCCCTCCAAAAGAGGATCCTGATTTGACCTCCAGCTTTGGCACAA
ATCTTCAGAATTTCAAGATGAAAACCAAAATCCTGTCTCAGGAATTAATTGCCTTCATTGAATCATCCCT
AGAGGATGGAAACCTTCAGGAAACAGTTTCTGCAATCAGCAGTGCTCTGGGTGGCATAGAGAAAGCCCCA
CTGAACATTGCAGTGATGGGGGAGACTGGGGCTGGAAAGTCCAGTCTCATCAATGCTCTCCAGGGAGTGG
GGGATGATGAAGAAGGTGCAGCTGCTTCCACAGGGGTGGTACATACAACCACTGAGAGAACACCATACAC
TTACACAAAGTTTCCCAGTGTGACACTGTGGGACCTGCCTGGCATTGGATCTACTGCCTTCCAACCACAT
GATTATCTGAAGAAAATCGAGTTTGAGGAGTATGACTTCTTCATTATTGTCTCTTCCGGACGCTTTAAAC
ATAATGACGCAGAACTTGCCAAAGCCATTGTGCAAATGAATAGGAGTTTCTATTTTGTTCGAACCCACAC
AGATCTTGATTTAATGGTTGTAAAACGGAGTAATCCTAGGAGATTCAACAGAGAGAACACATTAAAGCAG
ATTCGACATACCATTTCAAGTATGCTTAAGGAAGTTACCCACCAGGAGCCTCCAGTCTTCTTAGTCTCTA
ACTTTGATGTGTCTGACTTTGACTTCCCAAAGCTGGAATCCACCCTTCTGAGCCAGCTCCCAGCCTACAA
ACACCACATGTTCATGCTCACTTTGCCTATTGTTACAGATTCCACCATAGACCGGAAGAGGGATATGCTG
AAACAAAAGGTCTGGAAGGAATCCACAATGCCAAGAGCATGGGCTACCATACCATCCCTGGGACTGACCC
AAAAGGACATGGAGATGTTGCAACAGACTTTGAATGACTATAGATCTTCCTTTGGCCTGGATGAGGCATC
ACTGGAAAACATCGCTGAGGATTTGAACGTGACACTGGAGGAGCTCAAGGCAAACATTAAGTCTCCACAT
TTGCTCTCAGATGAGCCAGATACATCCTTAACGGAGAAACTATTGAAGTACATTGGAAATCCTTACTTTT
CAAAGGTTTTCCATTTGCAAAATTATTTCATTGACACGGTTGCGAGCGATGTTAAAATTATCCTCAGTAA
AGAAGAGCTTTTCACAGAGCAGGTGAGCTCATTCAACTCTAAGGCCTCTCTATATCGGGAGGAGTCCGTG
GGCAAAGTGTTTCCAGTTGGTCCAGGAAGCACCTTTCTATTTCATTTCATTGAAATGTTTCAAAGTGACT
CTGACGAACTTTGTCATGTCCATGTTCTGCTCCTGTTGACATCCGGGGGCCTCTCTAGTGAGACTGTTAC
ATGA

Translation (467 aa):
MGQTSSSTPPPKEDPDLTSSFGTNLQNFKMKTKILSQELIAFIESSLEDGNLQETVSAISSALGGIEKAP
LNIAVMGETGAGKSSLINALQGVGDDEEGAAASTGVVHTTTERTPYTYTKFPSVTLWDLPGIGSTAFQPH
DYLKKIEFEEYDFFIIVSSGRFKHNDAELAKAIVQMNRSFYFVRTHTDLDLMVVKRSNPRRFNRENTLKQ
IRHTISSMLKEVTHQEPPVFLVSNFDVSDFDFPKLESTLLSQLPAYKHHMFMLTLPIVTDSTIDRKRDML
KQKVWKESTMPRAWATIPSLGLTQKDMEMLQQTLNDYRSSFGLDEASLENIAEDLNVTLEELKANIKSPH
LLSDEPDTSLTEKLLKYIGNPYFSKVFHLQNYFIDTVASDVKIILSKEELFTEQVSSFNSKASLYREESV
GKVFPVGPGSTFLFHFIEMFQSDSDELCHVHVLLLLTSGGLSSETVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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