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Report for CCDS41074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41074.1 Public Mus musculus X Awat1 23 108 98 CCDS HistoryNCBI Gene:245533Re-query CCDS DB by CCDS ID:41074.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096361.4 ENSMUSP00000094088.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096361.4Link to Ensembl Protein Viewer:ENSMUSP00000094088.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096361Re-query CCDS DB by Protein ID:ENSMUSP00000094088
Original member Current member NCBI NM_001081136.1 NP_001074605.1 Accepted alive Link to Nucleotide Sequence:NM_001081136.1Link to Protein Sequence:NP_001074605.1Re-query CCDS DB by Nucleotide ID:NM_001081136Re-query CCDS DB by Protein ID:NP_001074605Link to BLAST:NP_001074605.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074605.1 328 A2ADU9 328 100% 0 0

Chromosomal Locations for CCDS 41074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100572337 100572412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100573469 100573576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100573830 100573900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100574699 100574903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100575522 100575693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100577346 100577545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100577734 100577888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGTCTTGCTCTATGAAGACTGAACACTTACAGAGTCTGAGCCTTCTGCAGTGGCCCTTGAGCTACGTTG
CCATGTTTTGGATTGTGCAGCCATTGTTAATTTGCCTATTGTTCACACCCTTGTGGCCGCTACCAACAGT
TTACTTTGTCTGGTTACTTCTCGACTGGAAGACTCCAGATAAAGGTGGCAGGCGTTCAGACTGGGTACGG
AACTGGAATGTCTGGAACCACATCAGGGACTATTTCCCCATTACAATCCTGAAGACTAAGGACCTGTCAC
CTTCAGAGAACTACATCATGGGGGTCCACCCCCATGGTCTCCTGACCTTCGGTGCCTTCTGCAACTTCTG
CACTGAGGCCACAGGCTTCTCGAAGACCTTCCCAGGCATCACTCCTCACTTGGCCACACTGTCCTGGTTC
TTCAAGATCCCCATTATTAGGGACTACATCATGGCCAAAGGATTGTGTTCTGTGAGCCAGGCATCCATCG
ACTACCTGCTGAGCCATGGCACTGGAAACCTCGTGGGCATTGTCGTGGGAGGAGTGGGAGAGGCCCTACA
GAGTGTGCCTAACACCACCACCCTCCTCCTCAAGAAACGCAAAGGGTTTGTGCGCACAGCCCTCCAACAT
GGGGCTCATCTGGTCCCTACCTTCACGTTCGGAGAAACAGAGGTATATGACCAGGTACTGTTTCATGAGG
ATAGCCGGATGTTCAAGTTCCAAAGCCTCTTTCGCCGGATCTTTGGTTTCTATTGCTGTGTCTTCTATGG
ACAAGGTTTCCATCAAGACTGCAAGGGACTCCTACCATACCACAAACCCATCATCACTGTAGTTGGGGAA
GCTTTGCCACTGCCCCAGGTTAAAAACCCAAGCCCAGAGATAGTGGACAAATACCATGCACTCTACATGG
ACGCCCTGTACAAGCTGTTTGAGCAGCACAAGGTCCAGTATGGCTGCTCCAACACCCAGAAGCTGATATT
CTTGTGA

Translation (328 aa):
MSCSMKTEHLQSLSLLQWPLSYVAMFWIVQPLLICLLFTPLWPLPTVYFVWLLLDWKTPDKGGRRSDWVR
NWNVWNHIRDYFPITILKTKDLSPSENYIMGVHPHGLLTFGAFCNFCTEATGFSKTFPGITPHLATLSWF
FKIPIIRDYIMAKGLCSVSQASIDYLLSHGTGNLVGIVVGGVGEALQSVPNTTTLLLKKRKGFVRTALQH
GAHLVPTFTFGETEVYDQVLFHEDSRMFKFQSLFRRIFGFYCCVFYGQGFHQDCKGLLPYHKPIITVVGE
ALPLPQVKNPSPEIVDKYHALYMDALYKLFEQHKVQYGCSNTQKLIFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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