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Report for CCDS72426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72426.1 Public Mus musculus X Pcdh11x 23 108 98 CCDS HistoryNCBI Gene:245578Re-query CCDS DB by CCDS ID:72426.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113358.9 ENSMUSP00000108985.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113358.9Link to Ensembl Protein Viewer:ENSMUSP00000108985.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113358Re-query CCDS DB by Protein ID:ENSMUSP00000108985
Original member NCBI NM_001271810.1 NP_001258739.1 Updated not alive Link to Nucleotide Sequence:NM_001271810.1Link to Protein Sequence:NP_001258739.1Re-query CCDS DB by Nucleotide ID:NM_001271810Re-query CCDS DB by Protein ID:NP_001258739
Current member NCBI NM_001271810.2 NP_001258739.1 Accepted alive Link to Nucleotide Sequence:NM_001271810.2Link to Protein Sequence:NP_001258739.1Re-query CCDS DB by Nucleotide ID:NM_001271810Re-query CCDS DB by Protein ID:NP_001258739Link to BLAST:NP_001258739.1

Chromosomal Locations for CCDS 72426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 120364830 120365369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120399402 120401897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120594705 120594785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120726501 120726699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120905698 120906344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3963 nt):
ATGGACTTGTTGTCCGGGACGTATATATTTGCGGTCCTGTTAGCATGCGTCGTGTTTCAGTCTGGCGCCC
AG
GAGAAGAATTATACAGTCCGAGAAGAAATGCCAGAAAACGTCCTGATAGGCGACTTGTTGAAAGACCT
C
AACTTGTCGCTTATTCCCGACAAGTCCTTAACCACTCCTATGCAGTTCAAATTAGTTTACAAAACCGGG
GAT
GTACCATTGATTCGCATTGAAGAGGGTACTGGAGAGATCTTCACTACTGGTGCACGCATTGATCGTG
AG
AAATTATGTGCTGGAATCGTGTTGGATGCCCGTTGCTTTTACGAAGTGGAGGTTGCTGTTTTGCCGGA
T
GAAATATTTCGATTGGTTAAGATACGCTTTCTGATTGAAGACATAAATGATAATGCACCGTTATTCCCA
ACA
ACTGTCATCAACATATCAATTCCGGAGAACTCGGCTATAAACTCTCGATATTCTCTTCCAGCAGCCA
TT
GATCCTGACATTGGAATAAATGGAGTCCAAAATTACCAACTAATTAAGAGTCAAAATATTTTCGGACT
T
GATGTCATTGAAACACCAGAAGGAGACAAGATGCCCCAACTGATTGTTCAAAAGGAGTTAGATAGAGAA
GAG
AAGGATACCTATGTGATGAAAGTAAAAGTTGAAGATGGTGGCTTTCCTCAAAGATCCAGTACAGCTA
TT
TTGCAAGTAAGTGTTGCTGATACAAACGACAATCACCCAATCTTCATAGAAAAGGAAATTGAAGTCAG
T
ATACCAGAAAATGCTCCTATAGGTTCTTCAGTGACACAGCTCCATGCCACAGATGCAGATATAGGTGAG
AAT
GCCAGAATTCACTTTTATTTCAGCAACCTAGTCTCCAACATCGCTAAGAGACTGTTTCATCTAAACA
CC
ACTACTGGACTTATCACTGTCAAAGAACCACTGGATAGGGAAGAATCACCAAGTCACAAGTTATTGGT
T
TTGGCAACTGATGGTGGATCAACACCAGCAAGAGCAACGGTGCTGGTAAATGTCACAGATATCAATGAT
AAT
GTCCCATCAATTGACATAAGATACATTGTCAATCCAACCAATGGCACTGTGCTTCTTTCAGAGAATG
CT
CCACTTAACACTAAAATTGCTCTCATAACTGTGATGGATAAGGATTCTGAACATAATGGTAGGGTGAC
A
TGCTTCACAGATCATGAAGTTCCTTTCAGATTGCGACCAGTATTCAGTAATCAGTTTCTCTTGGAGACT
GCT
GCATTTCTTGACTTTGAGTCCACAAGAGAATATGCCATAAAATTACTAGCCGCTGATGCTGGCAAAC
CT
CCTTTGAATCAGTCATCCATGCTCCTGATCAAAGTAAAAGATGAAAATGACAATGCTCCAGTTTTCAC
C
CAGTCTTTCATAAGCCTTTCTGTTCCTGAGAATAACTCTCCTGGTGCACAGTTGACAAAAATCAGTGCA
ACA
GATGCAGACAGTGGACAGAATGCTGAAATAAGCTACATGCTAGGTTTTGATGCACCACCTGAATTCA
AT
CTGGATCAACGTACTGGCATCCTGACTGCAGTGAAGAAACTAGATAGGGAAAAACAGGAAAAGTATTA
C
TTTACAGTTTTGGCACAGGACAATGGAATTCCACCCTTAATGTCCAATGCCACTGTATTTGTGACTGTT
CTT
GACCAGAATGATAATAGCCCAATTTTCACTCATAATGAATATAACTTCTATGTTCCTGAAAGCCTTC
CA
AAACATGGCACAGTAGGGCTAATAACTGTGACTGATCCTGATTACGGAGAGAATTCTGCAGTTACCCT
C
TCCATCTTAGATGTGAATGATCAATTCACTATTGATCCACAGTCTGGTGTCATCAGGCCAAATATTTCA
TTT
GACAGAGAAAGACAAGAATCCTATACTTTCTATGTAAAAGCTGAGGATGGTGGTAGGGTATCACGTT
CT
TCAACTGCTAGAGTAACCATAAATGTGGTTGATGTCAATGATAACAAACCAATTTTTATTGACCCTCC
T
TCCAATTACTCCTTTGAATGGGTTCTACCATCCACAAACCCTGGCACAGTTGTCTTCAAGGTTGTTGCA
ATT
GACGATGATATTGGCATGAATGCAGAGGTTCTTTACAGCATTGTTGGAGGAAATACAAAAGGACTGT
TT
ATGATTGAACAAACATCAGGTAACATCACATTGAAGGAGAAGTGCATGGTTTCAGATCTTGGTTTACA
C
CGAGTCATAGTCAAAGCTAATGATTTAGGACAACCTGATTCTCTCTTCAATGTTGTAAATGTCAATTTC
TTT
ATAAATGAGTCCGTGCCCAATGCCACACTGATTTATGAACTGGTGCGCAGAAGCATTGATGCACCTG
CC
AATCAAAATACTGAAACAACCAGTGCATCCTCACCAACCACTGACTATGTCAAGATCATGGTTGCCAT
T
GTGGCTGGCACCATAACTGTTGTCCTAGTTATTTTCATCACTGCTGTAGTAAGATGCCGCCAACCACCA
CAT
CTTAAGGCTTCTCAGAAAAACAAACAGAATTCTGAGTGGGTTACTCCAAACCCAGAAAACAGGCAGA
TG
ATTATGATGAAGAAGAAGAAGAAAAAGAAGAAGAAGCATCCCCCCAAGAACTTGCTGCTTAATTTTGT
C
ACTATTGAAGAAGCAAAGCCAGATGACGGTGAAAATGAGAGAAACAGTGTCACACTAGATCTTCCAATT
GAG
CTGGAAGAGCAAACCATGGGCAAATACAACTGGGGCACTACACCTACTACTTTCAAACCTGATAGCC
CT
GATTTGGCTCGACACTACAAATCGGCCTCTCCTCAGCCTGCATTCCAGATCCAGCCTGAAACGCCCCT
G
AACTCAAAGCACCACATCATTCAGGAACTGCCTCTTGATAATACCTTCGTTGGCTGTGATTCCATCTCC
AAG
TGCTCCTCCAGCAGTTCTGATCCCTACAGTGTTTCTGAGTGTAGCTATCCAGTGACAACTTTCAAGG
CC
CCTGTGTCTGTGCATATCAGACCGACAATGAAGGAGGTGGTAAGATCTCACACACCCATGAAAGAGGC
A
ACCACTGTGGAAATCTGGACTCATCCACATCCACAGTCCCAGAGACGTGTCACATTTCACCTACCAGAA
GGC
TCTCAGGAAAGCATCAGTGATGGTGGATTGGGAGACCACGATGCAGGCAGCCTTCCCAGTACATCCC
AT
GCACTGCCTCTTGGCTATCCTCAGGAAGAGTATTTTGATCATGCTGCACCAAACAACCGCACTGAAGG
G
GATGGCAACTCTGATCCTGAATCTACTGCAGAAATAACAGTGCAGCCAACTGTGGAAGAAGCCTCTGAT
ACC
TGTACTCAAGAATGCCTCATCTTGGGACACTCTGACTCCTGCTGGATGCCAGCTACTTTGACCAATC
CT
AGCCCTTCACAGATAAAGACCTCTGCTATCTGCCACAGCCCACCCAGGCCCCGCTTGTCAGTTCGTCG
C
TACAGCCCTCCAGTGACACAGACGGTCACTATTTGCCACAGCCCCCCTGTGACCCAAGCTATTGCACTG
TGT
CACAGCCCTCCACCAGTACAGGTTACTGTACCCCGCCATAGTCCACCACCAGCACAGGCCTCTGCAG
TC
AGCTACAGCCCAACTCTAGTACAGGCTGTGGTAATTCACCACAGTCCTCCTCTGCCACAGGCTGCCAC
A
CACCATCGCACTCAGGCACAACCACCAATGGGTTTGCAGCAGGGATGGGTGCAGGGTGCTGGAGCAGAT
GGA
CTGTATCCTATTGATCAGGGAGTACAGGGCAGTACAAGAGCTCAGTTTTACACCATGGCTGAAAGAT
TT
CATCCCGATGATGACTCAATTAAAGTCATTCCCTTGACCACCTTTACTTCAGGTCAACAGGCCAGATC
C
TCAAGAGGTGATTCTCCAATCATAGAGGAACACCCCTTGTAA


Translation (1320 aa):
MDLLSGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLKDLNLSLIPDKSLTTPMQFKLVYKTG
D
VPLIRIEEGTGEIFTTGARIDREKLCAGIVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFP
T
TVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIK
SQNIFGLDVIETPEGDKMPQLIVQKELDRE
E
KDTYVMKVKVEDGGFPQRSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGE
N
ARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGGSTPARATVLVNVTDIND
N
VPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQFLLET
A
AFLDFESTREYAIKLLAADAGKPPLNQSSMLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISA
T
DADSGQNAEISYMLGFDAPPEFNLDQRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPLMSNATVFVTV
L
DQNDNSPIFTHNEYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSILDVNDQFTIDPQSGVIRPNIS
F
DRERQESYTFYVKAEDGGRVSRSSTARVTINVVDVNDNKPIFIDPPSNYSFEWVLPSTNPGTVVFKVVA
I
DDDIGMNAEVLYSIVGGNTKGLFMIEQTSGNITLKEKCMVSDLGLHRVIVKANDLGQPDSLFNVVNVNF
F
INESVPNATLIYELVRRSIDAPANQNTETTSASSPTTDYVKIMVAIVAGTITVVLVIFITAVVRCRQPP
H
LKASQKNKQNSEWVTPNPENRQMIMMKKKKKKKKKHPPKNLLLNFVTIEEAKPDDGENERNSVTLDLPI
E
LEEQTMGKYNWGTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSIS
K
CSSSSSDPYSVSECSYPVTTFKAPVSVHIRP
TMKEVVRSHTPMKEATTVEIWTHPHPQSQRRVTFHLPE
G
SQESISDGGLGDHDAGSLPSTSHALPLGYPQEEYFDHAAPNNRTEGDGNSDPES
TAEITVQPTVEEASD
T
CTQECLILGHSDSCWMPATLTNPSPSQIKTSAICHSPPRPRLSVRRYSPPVTQTVTICHSPPVTQAIAL
C
HSPPPVQVTVPRHSPPPAQASAVSYSPTLVQAVVIHHSPPLPQAATHHRTQAQPPMGLQQGWVQGAGAD
G
LYPIDQGVQGSTRAQFYTMAERFHPDDDSIKVIPLTTFTSGQQARSSRGDSPIIEEHPL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser