NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25004.1 Public Mus musculus 11 Trpv3 23 108 98 CCDS HistoryNCBI Gene:246788Re-query CCDS DB by CCDS ID:25004.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25004.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049676.2 ENSMUSP00000053755.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049676.2Link to Ensembl Protein Viewer:ENSMUSP00000053755.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000049676Re-query CCDS DB by Protein ID:ENSMUSP00000053755
Original member Current member NCBI NM_145099.3 NP_659567.2 Accepted alive Link to Nucleotide Sequence:NM_145099.3Link to Protein Sequence:NP_659567.2Re-query CCDS DB by Nucleotide ID:NM_145099Re-query CCDS DB by Protein ID:NP_659567Link to BLAST:NP_659567.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659567.2 791 Q8K424 791 100% 0 0

Chromosomal Locations for CCDS 25004.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 73269662 73269780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73277728 73277832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73277940 73278026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73278916 73279070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73279762 73279938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73281674 73281814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73283593 73283873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73285862 73286038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73287351 73287509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73288168 73288269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73289235 73289308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73291569 73291734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73293933 73293999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73295195 73295469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73296429 73296541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73296728 73296807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 73297103 73297200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGAATGCCCACTCCAAGGAGATGGCGCCCCTCATGGGCAAAAGAACCACGGCACCTGGCGGGAACCCTG
TTGTACTGACAGAGAAGAGGCCAGCAGATCTCACCCCCACCAAGAAGAGTGCACACTTCTTCCTGGAGAT
AGAAGGATTTGAGCCCAACCCCACGGTCACCAAGACCTCTCCACCCATCTTCTCCAAGCCGATGGACTCC
AACATCCGGCAGTGCCTCTCTGGCAACTGTGATGACATGGACTCTCCCCAGTCTCCTCAGGATGATGTGA
CAGAGACCCCATCCAATCCCAACAGTCCGAGCGCAAACCTGGCCAAGGAAGAACAGAGGCAGAAGAAGAA
GCGACTGAAGAAGCGCATCTTCGCGGCTGTGTCCGAGGGCTGCGTGGAGGAGCTGCGGGAACTCCTACAG
GATCTGCAGGACCTCTGCAGGAGGCGCCGCGGCCTGGATGTGCCTGACTTCCTCATGCACAAGCTGACAG
CCTCAGACACCGGGAAGACCTGCCTGATGAAGGCTTTGCTCAACATCAATCCCAACACCAAAGAGATCGT
GCGGATTCTGCTTGCCTTCGCTGAGGAGAACGACATCCTGGACAGGTTCATCAACGCTGAGTACACGGAA
GAGGCCTATGAAGGGCAGACAGCGCTGAACATCGCCATCGAGCGGCGCCAGGGAGACATCACAGCAGTGC
TTATAGCAGCGGGTGCTGACGTCAATGCTCACGCCAAGGGGGTCTTCTTCAACCCCAAATACCAGCATGA
AGGCTTCTATTTTGGCGAGACACCCCTGGCTTTGGCAGCGTGTACTAACCAGCCTGAGATTGTGCAGCTG
CTGATGGAGAATGAGCAGACAGACATCACTTCCCAGGATTCCCGGGGAAACAACATCCTGCACGCGCTGG
TGACAGTGGCTGAGGACTTCAAGACTCAGAATGACTTCGTTAAGCGCATGTATGACATGATCCTGCTGAG
GAGTGGCAACTGGGAGCTGGAGACCATGCGCAACAACGATGGGCTCACACCACTGCAGCTGGCTGCCAAG
ATGGGCAAGGCTGAGATCCTGAAGTACATCCTCAGCCGCGAGATCAAGGAGAAGCCTCTCCGGAGCTTGT
CCAGGAAGTTCACGGACTGGGCGTATGGGCCTGTGTCATCCTCACTCTATGACCTCACCAATGTAGACAC
AACGACGGATAACTCTGTGCTGGAAATCATCGTCTACAACACCAACATTGATAACCGACATGAGATGCTG
ACCCTGGAGCCTCTGCATACGCTGCTACACACGAAATGGAAGAAATTTGCCAAGTACATGTTCTTCTTGT
CCTTCTGCTTCTATTTCTTCTACAACATCACCCTGACCCTTGTCTCTTACTACCGTCCTCGGGAAGATGA
GGATCTCCCACACCCCTTGGCCCTGACACACAAAATGAGTTGGCTTCAGCTCCTAGGGAGGATGTTTGTC
CTCATCTGGGCCACATGCATCTCTGTGAAAGAAGGCATTGCCATTTTCCTGCTGAGACCCTCCGATCTTC
AGTCCATCCTGTCAGATGCCTGGTTTCACTTTGTCTTTTTTGTCCAAGCTGTACTTGTGATACTGTCTGT
ATTCTTGTACTTGTTTGCCTACAAAGAATACCTCGCCTGCCTCGTGCTGGCCATGGCCCTGGGCTGGGCG
AACATGCTCTACTACACGAGAGGCTTCCAGTCTATGGGCATGTACAGCGTCATGATCCAGAAGGTCATTT
TGCATGATGTCCTCAAGTTCTTGTTTGTTTACATCCTGTTCTTACTTGGATTTGGAGTAGCGCTGGCCTC
ACTGATTGAGAAGTGCTCCAAGGACAAAAAGGACTGCAGTTCCTATGGCAGCTTCAGCGACGCGGTGCTG
GAGCTCTTCAAGCTCACCATAGGCCTGGGCGACCTGAACATCCAGCAGAACTCCACCTACCCCATCCTCT
TTCTCTTCCTACTCATCACCTATGTCATCCTCACCTTCGTCCTCCTCCTCAACATGCTCATTGCCCTGAT
GGGGGAGACGGTGGAGAACGTCTCCAAAGAAAGTGAGCGGATCTGGCGCTTGCAGAGAGCCAGGACCATC
TTGGAGTTTGAGAAAATGTTACCAGAATGGCTGAGAAGCAGATTCCGCATGGGCGAGCTGTGCAAAGTAG
CAGATGAGGACTTCCGGCTGTGTCTGCGGATCAACGAGGTGAAGTGGACGGAATGGAAAACACACGTGTC
CTTCCTTAATGAAGACCCGGGACCCATAAGACGGACAGCAGATTTAAACAAGATTCAAGATTCTTCCAGG
AGCAATAGCAAAACCACCCTCTATGCGTTTGATGAATTAGATGAATTCCCAGAAACGTCGGTGTAG

Translation (791 aa):
MNAHSKEMAPLMGKRTTAPGGNPVVLTEKRPADLTPTKKSAHFFLEIEGFEPNPTVTKTSPPIFSKPMDS
NIRQCLSGNCDDMDSPQSPQDDVTETPSNPNSPSANLAKEEQRQKKKRLKKRIFAAVSEGCVEELRELLQ
DLQDLCRRRRGLDVPDFLMHKLTASDTGKTCLMKALLNINPNTKEIVRILLAFAEENDILDRFINAEYTE
EAYEGQTALNIAIERRQGDITAVLIAAGADVNAHAKGVFFNPKYQHEGFYFGETPLALAACTNQPEIVQL
LMENEQTDITSQDSRGNNILHALVTVAEDFKTQNDFVKRMYDMILLRSGNWELETMRNNDGLTPLQLAAK
MGKAEILKYILSREIKEKPLRSLSRKFTDWAYGPVSSSLYDLTNVDTTTDNSVLEIIVYNTNIDNRHEML
TLEPLHTLLHTKWKKFAKYMFFLSFCFYFFYNITLTLVSYYRPREDEDLPHPLALTHKMSWLQLLGRMFV
LIWATCISVKEGIAIFLLRPSDLQSILSDAWFHFVFFVQAVLVILSVFLYLFAYKEYLACLVLAMALGWA
NMLYYTRGFQSMGMYSVMIQKVILHDVLKFLFVYILFLLGFGVALASLIEKCSKDKKDCSSYGSFSDAVL
ELFKLTIGLGDLNIQQNSTYPILFLFLLITYVILTFVLLLNMLIALMGETVENVSKESERIWRLQRARTI
LEFEKMLPEWLRSRFRMGELCKVADEDFRLCLRINEVKWTEWKTHVSFLNEDPGPIRRTADLNKIQDSSR
SNSKTTLYAFDELDEFPETSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH