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Report for CCDS25664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25664.1 Public Mus musculus 11 Exoc7 23 108 98 CCDS HistoryNCBI Gene:53413Re-query CCDS DB by CCDS ID:25664.1Re-query CCDS DB by GeneID:53413See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021147.13 ENSMUSP00000021147.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021147.13Link to Ensembl Protein Viewer:ENSMUSP00000021147.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021147Re-query CCDS DB by Protein ID:ENSMUSP00000021147
Original member NCBI NM_016857.3 NP_058553.2 Updated not alive Link to Nucleotide Sequence:NM_016857.3Link to Protein Sequence:NP_058553.2Re-query CCDS DB by Nucleotide ID:NM_016857Re-query CCDS DB by Protein ID:NP_058553
Current member NCBI NM_016857.4 NP_058553.2 Accepted alive Link to Nucleotide Sequence:NM_016857.4Link to Protein Sequence:NP_058553.2Re-query CCDS DB by Nucleotide ID:NM_016857Re-query CCDS DB by Protein ID:NP_058553Link to BLAST:NP_058553.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058553.2 697 O35250-1 697 100% 0 0

Chromosomal Locations for CCDS 25664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116289183 116289285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116289525 116289658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116289950 116289991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116290207 116290270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116291139 116291234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116291454 116291574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116292519 116292584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116293275 116293313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116293972 116294038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116294407 116294469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116294742 116294840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116295174 116295326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116295544 116295689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116297571 116297663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116300266 116300433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116301104 116301326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116304577 116304682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116304864 116305048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116306388 116306453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116306614 116306673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2094 nt):
ATGATTCCCCCGCAGGAGGCTTCCGCCCGGCGGCGGGAGATCGAGGACAAACTGAAGCAGGAGGAGGAGA
CGCTGTCGTTTATCCGAGACAGCCTGGAGAAGAGCGACCAGCTCACTAGGAACATGGTGTCCATCCTGTC
GTCCTTTGAGAGCCGACTCATGAAGCTGGAGAACTCTATCATCCCTGTGCACAAGCAGACAGAGAACCTA
CAGAGGCTGCAGGAGAACGTGGAGAAGACGTTATCCTGCCTGGACCACGTTATCAGCTACTACCACGTAG
CCAGCGACACGGAGAAGATCATCCGAGAGGGCCCCACAGGTAGGCTGGAAGAGTACCTGGGAAGTATGGC
CAAAATCCAGAAGGCTGTGGAGTATTTTCAGGACAATAGCCCAGACAGCCCAGAACTCAACAAAGTGAAG
CTGCTGTTTGAGCGAGGGAAGGAGTCCCTGGAGTCGGAGTTCCGCAGTCTGATGACCCGGCACAGCAAGG
TGGTCTCCCCCGTGCTCCTCCTGGACCTCATCAGTGCTGACGACGAGCTGGAGGTGCAGGAGGACGTGGT
CCTGGAGCACCTGCCCGAGAGCGTGCTCAGAGACGTGGTCCGCATCTCCCGCTGGCTGGTGGAATATGGT
CGGAACCAAGACTTCATGAATGTCTACTACCAGATCCGCTCCAGCCAGCTGGACCGCTCCATCAAGGGTC
TGAAGGAGCATTTTCGCAAAAGCAGTTCCTCTTCTGGGGTTCCCTACTCCCCCGCCATCCCCAATAAGAG
GAAAGACACGCCCACCAAGAAGCCCATCAAGCGGCCAGGGACGATCCGTAAGGCTCAGAACCTTCTGAAA
CAGTATTCCCAGCATGGTCTAGATGGGAAAAAGGGGGGCTCTAACCTCATTCCTCTGGAAGGGAGAGACG
ACATGCTGGACGTGGAGACGGACGCCTACATTCACTGCGTCAGTGCCTTCGTCAAGCTGGCGCAGAGTGA
ATACCGGCTGCTGATGGAGATCATCCCTGAGCATCACCAGAAGAAAACCTTTGACTCCTTGATACAGGAT
GCCCTGGACGGGCTGATGCTTGAAGGGGAGAACATCGTGTCTGCTGCCAGGAAAGCCATCATCCGCCATG
ACTTCTCCACAGTGCTCACCGTCTTCCCCATCCTGCGGCACCTCAAGCAGACCAAGCCCGAGTTTGACCA
GGTGCTCCAGGGCACAGCAGCCAGCACCAAGAACAAGCTGCCCGGCCTCATCACCTCCATGGAGACCATT
GGGGCCAAAGCTCTAGAAGACTTTGCTGATAACATCAAGAATGATCCAGACAAGGAATACAACATGCCTA
AAGACGGCACTGTTCATGAGCTCACAAGCAATGCCATCCTGTTCCTACAGCAGCTTCTGGACTTCCAGGA
GACAGCAGGTGCCATGCTGGCCTCCCAAGTTCTTGGGGACACATACAATATTCCTTTAGACCCCCGAGAA
ACCAGCTCTTCGGCCACCAGCTACAGCTCCGAGTTCAGCAAGCGGCTGCTGAGCACCTACATCTGCAAAG
TCTTGGGTAACCTGCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCAT
CTTCCTACACAACAACTACAATTACATCCTCAAGTCCCTGGAGAAGTCTGAGCTGATCCAGCTGGTGGCT
GTAACCCAGAAGACTGCCGAGCGCTCCTACCGGGAGCACATCGAGCAGCAGATCCAGACCTACCAGCGCA
GCTGGCTAAAGGTGACTGACTACATCGCAGAGAAGAACCTACCTGTGTTCCAGCCTGGAGTCAAGCTCCG
GGACAAAGAGCGGCAGATGATTAAGGAACGTTTCAAGGGGTTCAATGATGGACTCGAAGAGCTGTGCAAG
ATTCAGAAGGTCTGGGCTATTCCAGACACAGAGCAGAGAGACAAGATTCGACAGGCTCAGAAAGACATTG
TCAAGGAGACCTACGGGGCCTTTCTGCACAGGTATGGCAGCGTGCCCTTCACCAAAAACCCGGAGAAATA
CATTAAGTACCGCGTGGAGCAGGTGGGAGACATGATCGATCGCCTTTTCGACACCTCTGCTTGA

Translation (697 aa):
MIPPQEASARRREIEDKLKQEEETLSFIRDSLEKSDQLTRNMVSILSSFESRLMKLENSIIPVHKQTENL
QRLQENVEKTLSCLDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVK
LLFERGKESLESEFRSLMTRHSKVVSPVLLLDLISADDELEVQEDVVLEHLPESVLRDVVRISRWLVEYG
RNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPGTIRKAQNLLK
QYSQHGLDGKKGGSNLIPLEGRDDMLDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEHHQKKTFDSLIQD
ALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTAASTKNKLPGLITSMETI
GAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQVLGDTYNIPLDPRE
TSSSATSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVA
VTQKTAERSYREHIEQQIQTYQRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCK
IQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRLFDTSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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