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Report for CCDS51049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51049.1 Public Mus musculus 3 Aknad1 23 108 98 CCDS HistoryNCBI Gene:329738Re-query CCDS DB by CCDS ID:51049.1Re-query CCDS DB by GeneID:329738See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133931.8 ENSMUSP00000121755.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133931.8Link to Ensembl Protein Viewer:ENSMUSP00000121755.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000133931Re-query CCDS DB by Protein ID:ENSMUSP00000121755
Original member Current member NCBI NM_177859.3 NP_808527.2 Accepted alive Link to Nucleotide Sequence:NM_177859.3Link to Protein Sequence:NP_808527.2Re-query CCDS DB by Nucleotide ID:NM_177859Re-query CCDS DB by Protein ID:NP_808527Link to BLAST:NP_808527.2

Chromosomal Locations for CCDS 51049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108751672 108752649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108756456 108756495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108756741 108756886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108757241 108757303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108765110 108765237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108771910 108772007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108774977 108775099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108775186 108775293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108778226 108778304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108781121 108781250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108781917 108782051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGGACGAAACCGACTTTTCAGAAGATATGACTTATAAACAACAGGAGGACCTGCCTTATGATGGGGACT
TCTCCCAGATGAAGATGTGCACTTCTTACAACTTTACCATAACAAATGACACCTCTCCTGTCTCAGCAGA
AGTTGTTCTGGCAGGAGAAGACCCTCAGGAAGTGGCTTCTAACTGTGAGGTGCGCCAGGACACAGCTCTG
CTGGCAACTTGGGATAAGATGACTGAACTTGTCGGCAATAGGCATGATAAAGATAAGCAATGCGCCCTGG
CTTCTCCTGTTCCAGCTGATAAAGAAGATACCTCAAAGTCCCACGTCTCAGATATTTTACTCCATCATCT
CTCCGGAGAGCAATTCTTCAGGGGTCCAGGTGCTGGCTATGAAACTCTCCCAGAGACCTCGAATGCTGAC
AGTCTTGAAGGCTCAGATACTCTTATAAATATCATTTCATGTTATGCAAAAAAGTATTACCCCAAAGAAC
AAATCCCAGAATTCACTGGCCAGCCCAGTCCCCAAAATGGTTCAATAAATAGCAGCAAGCCCTGTTGCTC
CCCTGGCACAGAAGAAGAAAACGCCTCTCCCTTAGAAGAAGCAGTGGCTGCTGGGAAGAGCACCCATCAG
GAAGATCCAAGCTTTCTAACCAGGACTAAAGGTCCAGGTGATAAATATAAAAGCTGCCTGAGGCAGACAC
CCCAGAGACAGCTGCCAGACAAAGCAAATTCAGGCGACTGGCTCAGATACAGCCAGGCTCAAGTGCACTA
CCAGTTTCCAGATTTTCCTAAGGTTTCTCCCAAAGGGAAACTCTCTAGCAAACCACTTACCACAGCTAAC
GAAGGCGGCCATTCTCCGAGGTTGACGAATAAATCAACAGTTGTGCAAGATAATTTAGGAACCACGTCTG
GGTCAAATCGTGTTGAAAAACAACCGGAGCAGAAATGGAAATTTCCTGAACCTTCGCAACAAATACAGGT
GCAGCCTGCCACACACACCTGCCAAGAACCTCTCACAGGACTTGAACCTGAGAAATGTTGCTTGAATTTG
ACACCAACACCTCAAAAAGATCCTTTCTCAAATTCTTACATATTTCAAAAGATCTCCCATGGAAAACAGA
TGTGCCAGAAACTGAAAGAACAGACTGACCAACTGAAGAATAAGGTACAAGAATTTTCCAAAAGAATAAA
ACAGGACTCTTTCTGCCATTTGCAAGACATAAGACTGATGAACAAGGAACATGCTGGCAGTCTTCCAGGG
CCCTGGGGCTCCCGAGGAAGTGAGGTGACAGGGCTGCCGAGGGGAGGGCCACAGGAGGCCACCTCCAAGG
AGCTCAGTGAACTGGCCCTGAAGATGAAACAGAAAATGGAGAAAAGGGGCCACAGAAGAACTAACTGTGG
GAAGTTTTCCAGTAGCATCCATGAAAAAACACTGCCCCAAGACTCGGCTCTCGGTACTGATCCAGGACCC
GACTTTTGTCCTGATCCTGGTACTGGGCTCCAGAGTAACAAATGTGAAGCCTACGGAAGCAAGACTCAGA
ACTCCCAGAGAGTCTGTGAGGAAGACCCACCAAAAGAATTTTATTATAGATATAACACTCCAGGACAAGA
TGACTTAAATCATGGTGGAGGATATATCTTTGTCCAGCCTCACTTCTTATATGAAAATAAAATCTCTGCA
TCTTCTTGGTCAAAAGCAAAATGGATCTGGTCCTGGAGAGTGAACTCAGAACCCGTTCAAGATGAGCCCG
ATCCTGCGGCAGGAAAATATCCCAAGACTTATATGATCTCTACCTCAGACCTTGCAACACCCTCACCCCA
CCTCTGCTGCCTGGGAATTCCTAGAATCCAGTCCTTATGTCCCAGTGATAACATGGAAGAAATGGAATCT
AAGATTTTAAACTCGCCCTTGGAGCATGCCTTAAGGACAGCAACCATATTGAAAAAAAACACCGACCAAA
TGATTAGATCCATTGCAGAAGACCTCGCCAAGGCACAAGGATGGAGACACCAGCTAAGATACTACTAA

Translation (675 aa):
MDETDFSEDMTYKQQEDLPYDGDFSQMKMCTSYNFTITNDTSPVSAEVVLAGEDPQEVASNCEVRQDTAL
LATWDKMTELVGNRHDKDKQCALASPVPADKEDTSKSHVSDILLHHLSGEQFFRGPGAGYETLPETSNAD
SLEGSDTLINIISCYAKKYYPKEQIPEFTGQPSPQNGSINSSKPCCSPGTEEENASPLEEAVAAGKSTHQ
EDPSFLTRTKGPGDKYKSCLRQTPQRQLPDKANSGDWLRYSQAQVHYQFPDFPKVSPKGKLSSKPLTTAN
EGGHSPRLTNKSTVVQDNLGTTSGSNRVEKQPEQKWKFPEPSQQIQVQPATHTCQEPLTGLEPEKCCLNL
TPTPQKDPFSNSYIFQKISHGKQMCQKLKEQTDQLKNKVQEFSKRIKQDSFCHLQDIRLMNKEHAGSLPG
PWGSRGSEVTGLPRGGPQEATSKELSELALKMKQKMEKRGHRRTNCGKFSSSIHEKTLPQDSALGTDPGP
DFCPDPGTGLQSNKCEAYGSKTQNSQRVCEEDPPKEFYYRYNTPGQDDLNHGGGYIFVQPHFLYENKISA
SSWSKAKWIWSWRVNSEPVQDEPDPAAGKYPKTYMISTSDLATPSPHLCCLGIPRIQSLCPSDNMEEMES
KILNSPLEHALRTATILKKNTDQMIRSIAEDLAKAQGWRHQLRYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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