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Report for CCDS29164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29164.1 Public Mus musculus 18 Hars1 23 108 98 CCDS HistoryNCBI Gene:15115Re-query CCDS DB by CCDS ID:29164.1Re-query CCDS DB by GeneID:15115See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001416.7 ENSMUSP00000001416.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001416.7Link to Ensembl Protein Viewer:ENSMUSP00000001416.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001416Re-query CCDS DB by Protein ID:ENSMUSP00000001416
Original member Current member NCBI NM_008214.4 NP_032240.3 Accepted alive Link to Nucleotide Sequence:NM_008214.4Link to Protein Sequence:NP_032240.3Re-query CCDS DB by Nucleotide ID:NM_008214Re-query CCDS DB by Protein ID:NP_032240Link to BLAST:NP_032240.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032240.3 509 Q61035 509 100% 0 0

Chromosomal Locations for CCDS 29164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36766882 36766953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36767190 36767336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36768087 36768203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36770082 36770324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36770417 36770544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36770805 36770898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36771096 36771194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36771328 36771435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36772258 36772383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36773520 36773615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36776177 36776296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36782680 36782769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36783011 36783100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGCAGATCGTGCTGCTCTGGAGGAGCTGGTACGACTCCAGGGAGCGCATGTGAGGGGCCTTAAGGAGC
AGAAAGCGTCCGCTGAGCAGATCGAGGAGGAGGTGACGAAACTCCTAAAACTGAAGGCACAGCTGGGCCA
GGATGAAGGCAAACAGAAGTTTGTGCTCAAAACCCCCAAGGGCACGAGAGACTATAGTCCCCGGCAGATG
GCGGTCCGGGAAAAGGTGTTTGATGTCATCATCCGCTGTTTCAAACGCCATGGAGCAGAAGTGATTGATA
CACCTGTGTTTGAACTAAAGGAAACACTGACTGGAAAGTACGGAGAAGACTCAAAGCTTATCTATGACTT
GAAGGACCAGGGTGGGGAGCTGCTGTCCCTCCGTTATGACCTTACTGTCCCTTTTGCTCGCTATCTGGCA
ATGAATAAACTGACCAACATTAAACGCTACCATATAGCAAAGGTGTATCGCCGGGACAACCCAGCTATGA
CCCGAGGCCGTTACCGTGAATTCTATCAATGCGATTTTGACATTGCCGGACAGTTCGACCCCATGATTCC
TGATGCAGAGTGCCTAAAGATTATGTGCGAGATCCTGAGTTCACTTCAGATCGGCAACTTCCTGGTCAAG
GTAAACGACAGGCGCATCCTAGATGGGATGTTTGCTGTCTGTGGTGTTCCTGATAGCAAGTTCCGTACCA
TCTGCTCCTCGGTGGACAAGCTAGACAAGGTTTCCTGGGAGGAAGTGAAGAATGAGATGGTGGGAGAGAA
GGGCCTTGCACCGGAAGTGGCTGATCGCATCGGGGACTATGTCCAGCAGCATGGTGGGGTTTCTCTGGTG
GAGCAGTTACTGCAGGATCCTAAACTCTCCCAAAACAAACAGGCTGTAGAGGGCTTGGGAGACCTAAAGC
TGCTCTTTGAGTATCTAATCCTGTTTGGCATTGATGACAAGATCTCCTTTGACCTGAGCCTTGCTCGGGG
GCTAGACTACTATACTGGGGTCATCTATGAGGCAGTGCTGCTACAGATGCCAACCCAAGCTGGGGAAGAG
CCCCTGGGTGTGGGCAGCATAGCTGCTGGAGGGCGCTACGATGGCCTGGTTGGCATGTTTGACCCCAAGG
GGCGCAAGGTGCCATGCGTTGGGCTCAGTATTGGAGTGGAGCGGATCTTTTCCATTGTAGAGCAAAGATT
AGAGGCTTCAGAGGAAAAGGTACGGACCACAGAGACGCAGGTGCTTGTGGCATCTGCACAGAAGAAGCTG
CTGGAGGAGAGACTGAAGCTTGTCTCAGAGTTATGGGATGCTGGGATCAAGGCTGAGCTGCTGTACAAGA
AGAACCCGAAGTTACTAAACCAGTTGCAGTACTGTGAGGAGGCAGGCATCCCACTGGTGGCCATCATTGG
TGAGCAGGAACTCAAGGATGGCGTCATCAAGCTCCGCTCGGTGGCCAGCAGAGAGGAGGTGGATGTCCGA
AGAGAAGACCTTGTGGAGGAAATCAGAAGAAGAACAAATCAGCCCCTCTCCACCTGCTGA

Translation (509 aa):
MADRAALEELVRLQGAHVRGLKEQKASAEQIEEEVTKLLKLKAQLGQDEGKQKFVLKTPKGTRDYSPRQM
AVREKVFDVIIRCFKRHGAEVIDTPVFELKETLTGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLA
MNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIMCEILSSLQIGNFLVK
VNDRRILDGMFAVCGVPDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV
EQLLQDPKLSQNKQAVEGLGDLKLLFEYLILFGIDDKISFDLSLARGLDYYTGVIYEAVLLQMPTQAGEE
PLGVGSIAAGGRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKL
LEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVASREEVDVR
REDLVEEIRRRTNQPLSTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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