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Report for CCDS22079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22079.1 Public Mus musculus 8 Lrrc8e 23 108 98 CCDS HistoryNCBI Gene:72267Re-query CCDS DB by CCDS ID:22079.1Re-query CCDS DB by GeneID:72267See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053035.6 ENSMUSP00000052055.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053035.6Link to Ensembl Protein Viewer:ENSMUSP00000052055.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053035Re-query CCDS DB by Protein ID:ENSMUSP00000052055
Original member Current member NCBI NM_028175.2 NP_082451.2 Accepted alive Link to Nucleotide Sequence:NM_028175.2Link to Protein Sequence:NP_082451.2Re-query CCDS DB by Nucleotide ID:NM_028175Re-query CCDS DB by Protein ID:NP_082451Link to BLAST:NP_082451.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082451.2 795 Q66JT1 795 100% 0 0

Chromosomal Locations for CCDS 22079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 4231667 4231804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 4233915 4236164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGATCCCAGTGGCGGAGTTCAAGCAGTTCACAGAGCAGCAGCCTGCATTCAAGGTGCTCAAACCCTGGT
GGGATGTTCTGGCTGAGTACCTCACCGTGGCTATGCTCATGATCGGGGTATTCGGGTGCACCCTCCAGGT
GACACAGGACAAGATCATCTGCTTGCCTAGCCACGAATCTCGTGAGAACATATCGGGGGCTCCATGCCAG
CAGCTTTTGCCTCAAGGAATCTCTGAGCAGATGGGGGGTCTCCGAGAGCTCAGTGGCCTCAAAAACAACC
TAGACCTCCAGCAGTATAGCTTTATCAACCAGCTCTGCTATGAGACTGCCCTCCACTGGTATGCCAAATA
CTTCCCCTACTTGGTGGTTATCCATACTCTCATCTTTATGGTCTGTACCAGCTTTTGGTTCAAATTCCCT
GGTACCAGCTCCAAAATAGAACACTTCATCTCCATCCTGGGCAAGTGCTTTGATTCTCCATGGACCACTC
GGGCCTTGTCCGAGGTGTCTGGAGAAAATCACAAGGGCCCAGCTTCTGGACGGGCCATGGTGACCACGGT
AACCACCACAGGGGCAGGGTCGGGGAAGGTGGGTGAAGGTGAGAAGGAGAAAGTGCTCATTGAGCCCGAA
AAGGTGGTGTCTGAGCCTCCAGTTGTTACTCTGCTGGATAAGAAGGAGGGCGAGCAAGCGAAGGCCCTAT
TCGAGAAGGTCAAAAAGTTCCGAGTGCACGTGGAAGAGGGTGACATCCTCTATTCCATGTACATCCGGCA
GACAGTGCTCAAAGTGTGTAAGTTTTTTGCCATCCTGGTTTACAACCTGATCTATGTGGAGAAGATCAGC
TTTCTGGTGGCCTGTAGGGTGGAGACATCAGAGATCACGGGGTATGCCAGTTTCTGCTGCAACCACACCA
AGGCCCACCTCTTTTCTAAGCTGGCCTTCTGCTATATTTCCTTTGTGTGTGTCTATGGCATCACCTGCCT
GTATACACTCTACTGGCTCTTCCATAGGCCCCTAAAAGAGTACTCCTTCCGTTCTGTGCGTGAGGAGACA
GGGATGAACGATATCCCGGATGTTAAGAATGACTTTGCCTTCATGCTCCACCTCATTGACCAGTACGACT
CCCTCTATTCCAAACGCTTTGCAGTCTTCCTCTCTGAAGTCAGTGAGAGCCGCCTTAAGCAACTCAACCT
CAACCATGAGTGGACACCTGAGAAGCTGAGGCAGAAGCTGCAGCGTAACATGCGTGGCCGGCTGGAGCTG
AGCCTCTGCATGCTCCCTGGACTACCTGACACCGTCTTTGAGCTCAGCGAGGTGGAGGCACTCAGGCTGG
AGGCCATCTGTGACATCTCCTTTCCCCCTGGGCTCTCCCAGCTTGTGAACCTTCAGGAGCTCAGCTTGCT
TCACTCACCAGCCAGGCTGCCCTTTTCATCACAGATCTTCCTGCGAGATCGCCTGAAGGTGATCTGTGTT
AAATTCGAGGAGCTCCGAGAGGTACCCCTCTGGGTGTTTGGGCTTCGAGGCTTAGAAGAACTGCACCTGG
AAGGACTCTTTCCCCCAGAAATGGCTCGGGGTGCCACCCTGGAGAGCCTCCGGGAGCTTAAACAGCTCAA
GGTACTGTCTCTACGTAGCAATGCAGGGAAGGTGCCAGCCAGTGTGACTGATGTGGCCGGGCACCTTCAG
CGACTCAGCCTGCACAATGATGGGGCTCGTTTGCTTGCCCTAAACAGCCTCAAGAAGCTGGCAGTGTTAC
GGGAGCTGGAGCTGGTGGCCTGTGGGCTGGAACGTATCCCCCATGCAATCTTCAGCCTGGGGGCTCTGCA
GGAACTTGACCTTAAGGACAACCACCTTCGGTCTATCGAGGAGATCCTCAGCTTCCAGCACTGTCGGAAG
CTGGTCACTCTCAGGCTGTGGCACAACCAGATTGCCTATGTGCCCGAGCATGTGAGAAAGCTCCGGAGCC
TGGAGCAGCTCTACCTCAGTCACAACAAGCTGGAGACTCTGCCCACCCAGCTGGGCCAGTGCTTTGGCCT
CCGCCTGCTGGATTTATCCCACAACGGGCTTCGTTCCCTGCCACCTGAGTTGGGCCTTCTCCAGAGCCTC
CAGCATCTAGCCCTCTCCTACAACGCACTCGAGAGTCTGCCCGATGAATTGTTCTTCTGCCACAAGCTGC
GGACGTTACTCTTGGGCTACAACCACCTAACTCAGCTCTCACCTGACGTGGCTGCCCTCCAGGCCCTCAG
CCGTCTGGAGCTCAAGGGTAACAGGTTGGAGACACTGCCAGAAGAACTTGGTGACTGCAAGGGGCTGAAG
AAGTCGGGGCTGCTGGTGGAGGACACCCTTTATGAGGGACTGCCTGCAGAAGTTCGGGAAAAGATGGAGG
AGGAATGA

Translation (795 aa):
MIPVAEFKQFTEQQPAFKVLKPWWDVLAEYLTVAMLMIGVFGCTLQVTQDKIICLPSHESRENISGAPCQ
QLLPQGISEQMGGLRELSGLKNNLDLQQYSFINQLCYETALHWYAKYFPYLVVIHTLIFMVCTSFWFKFP
GTSSKIEHFISILGKCFDSPWTTRALSEVSGENHKGPASGRAMVTTVTTTGAGSGKVGEGEKEKVLIEPE
KVVSEPPVVTLLDKKEGEQAKALFEKVKKFRVHVEEGDILYSMYIRQTVLKVCKFFAILVYNLIYVEKIS
FLVACRVETSEITGYASFCCNHTKAHLFSKLAFCYISFVCVYGITCLYTLYWLFHRPLKEYSFRSVREET
GMNDIPDVKNDFAFMLHLIDQYDSLYSKRFAVFLSEVSESRLKQLNLNHEWTPEKLRQKLQRNMRGRLEL
SLCMLPGLPDTVFELSEVEALRLEAICDISFPPGLSQLVNLQELSLLHSPARLPFSSQIFLRDRLKVICV
KFEELREVPLWVFGLRGLEELHLEGLFPPEMARGATLESLRELKQLKVLSLRSNAGKVPASVTDVAGHLQ
RLSLHNDGARLLALNSLKKLAVLRELELVACGLERIPHAIFSLGALQELDLKDNHLRSIEEILSFQHCRK
LVTLRLWHNQIAYVPEHVRKLRSLEQLYLSHNKLETLPTQLGQCFGLRLLDLSHNGLRSLPPELGLLQSL
QHLALSYNALESLPDELFFCHKLRTLLLGYNHLTQLSPDVAALQALSRLELKGNRLETLPEELGDCKGLK
KSGLLVEDTLYEGLPAEVREKMEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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