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Report for CCDS29346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29346.1 Public Mus musculus 18 Dym 23 108 98 CCDS HistoryNCBI Gene:69190Re-query CCDS DB by CCDS ID:29346.1Re-query CCDS DB by GeneID:69190See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29346.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039608.8 ENSMUSP00000047054.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039608.8Link to Ensembl Protein Viewer:ENSMUSP00000047054.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039608Re-query CCDS DB by Protein ID:ENSMUSP00000047054
Original member Current member NCBI NM_027727.3 NP_082003.1 Accepted alive Link to Nucleotide Sequence:NM_027727.3Link to Protein Sequence:NP_082003.1Re-query CCDS DB by Nucleotide ID:NM_027727Re-query CCDS DB by Protein ID:NP_082003Link to BLAST:NP_082003.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082003.1 669 Q8CHY3-1 669 100% 0 0

Chromosomal Locations for CCDS 29346.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 75043130 75043269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75052981 75053033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75055281 75055374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75056630 75056763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75063101 75063173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75080203 75080328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75082365 75082507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75114790 75114972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75119111 75119289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75123458 75123583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75125424 75125537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75126825 75126919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75199163 75199265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75229990 75230172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75243285 75243398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75286620 75286769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGGGATCGAACAGCAGCAAGATCAGTGATCTTCCGAAAAACGAGTACTTAAAAAAGCTGTCAGGCCCCG
AGTCTATATCTGAAAACGACCCCTTCTGGAATCAGCTCTTTTCATTTTCTTTCCCCGCACCAACCAGCAG
TTCTGAGTTGAAGCTATTGGAAGAGGCAACCATTTCAGTTTGCAAGTCTTTGGTTGAAAACAACCCTCGA
ACAGGAAATCTTGCTGCGCTAACTAAGGTCTTCCTATCTAGAACCAGGGAGCTCAGGCTCTCAGCCGAGT
GTCAGAACCACATCTTCATCTGGCAGACACACAATGCTCTGTTTATTATTTGCTGCTTGCTGAAAGTGTT
CATCCGTGAGCTGTCTGAGGAAGAGCTGCAGCTTCATTTTACATATGAAGAAAAGTCCCCCGGCAGCTAC
AGTTCTGACTCTGAAGACCTTCTGGAAGAGTTGCTCTGCAGCTTGGTACAGTTAATCACTGATACTCCAC
TCTTGGATATCACGTATGAGATAGCAGTGGAGGCCATCTCGGCAATGGTTGTCTTCCTTTCCTGCCAACT
CTTCCACAAGGAGGTTCTGCGACAGAGCATCAGTCACAAGTACCTGATGCAAGGCCCATGTCTTCCCTAC
ACCAGTAAACTTGTGAAAACCTTATTGTATAACTTTATCAGACAAGAAAAGCCACCTCCGCCCGGAACCC
ATGTCTTCCCTCAGCAGTCGGATGGGGGAGGACTGCTGTATGGACTGGCATCAGGAGTAGCAACTGGTCT
CTGGACTGTCTTCACGCTAGGCGGGGCAGGCAGCAAAGCAGCTGCGTCCCCAGAACTTACATCTCCTCTG
GCCAACCAGAGTCTCCTGCTGCTGCTGGTGCTGGTGAACCTGACGGATGCCCCAGACATACCCAACCCCT
ACAGGCAAGCTGTCTCGTCATTTAAGAACACGCAAGACAGCAGTCCGTTCCCATCATCAATTCCTCATAC
CTTCCAGATTAACTTTAACAGTTTGTACACAGCCCTGTGTGAGCAGCAGACGTCTGATCAGGCAACGCTG
CTCCTGTACACGCTGCTCCACCAGAACAGCAATGTCAGGACGTACGTGCTGGCCCGGACGGATATGGAAA
ATCTTGTTTTACCAATTCTTGAGATTTTGTATCATGTTGAGGAAAGAAACTCACACCATGTCTATATGGC
CCTTATAATCCTGTTGATCCTTACAGAAGACGATGGCTTCAATCGGTCCATTCATGAAGTGATATTAAGA
AACATTACTTGGTATTCAGAAAGAGTCTTAACTGAGATTTCCCTGGGGAGCCTCCTAATTCTGGTGGTAA
TAAGAACCATCCAGTACAATATGACCAGGACTCGAGACAAGTACCTGCACACAAACTGCCTGGCGGCTTT
AGCAAACATGTCAGCGCAGTTCCGCTCCCTCCACCAGTACGCTGCCCAGAGGATCATCAGTTTGTTTTCT
TTGCTGTCTAAAAAACACAACAAGGTCCTGGAGCAAGCCACGCAGTCCTTGAGAGGTCCCCTGAGCTCCA
GCGATGTCCCTCTCCCAGATTATGCACAGGACCTCAGTGTCATTGAAGAAGTGATTCGGATGATGCTGGA
GATCATCAACTCCTGCCTGACAAATTCTCTTCACCACAACCCAAACTTGGTGTACGCCTTGCTTTACAAA
CGGGACCTCTTTGAGCAATTCCGAACTCATCCCTCATTCCAGGACATAATGCAAAACATTGACCTGGTGA
TCTCCTTCTTTAGCTCAAGACTTCTACAAGCTGGAGCTGAGCTGTCGGTGGAAAGGGTCTTGGAAATCAT
TAAACAAGGGGTTGTGGCGCTGCCCAAAGACAGACTAAAGAAGTTTCCAGAACTGAAGTTCAAATACGTG
GAGGAAGAGCAGCCTGAGGAGTTCTTCATCCCGTACGTCTGGTCCCTGGTCTACAACTCAGCGGTCGGCT
TGTACTGGAACCCGCAGGACATCCAGCTGTTTGCCATGGACTCGGACTGA

Translation (669 aa):
MGSNSSKISDLPKNEYLKKLSGPESISENDPFWNQLFSFSFPAPTSSSELKLLEEATISVCKSLVENNPR
TGNLAALTKVFLSRTRELRLSAECQNHIFIWQTHNALFIICCLLKVFIRELSEEELQLHFTYEEKSPGSY
SSDSEDLLEELLCSLVQLITDTPLLDITYEIAVEAISAMVVFLSCQLFHKEVLRQSISHKYLMQGPCLPY
TSKLVKTLLYNFIRQEKPPPPGTHVFPQQSDGGGLLYGLASGVATGLWTVFTLGGAGSKAAASPELTSPL
ANQSLLLLLVLVNLTDAPDIPNPYRQAVSSFKNTQDSSPFPSSIPHTFQINFNSLYTALCEQQTSDQATL
LLYTLLHQNSNVRTYVLARTDMENLVLPILEILYHVEERNSHHVYMALIILLILTEDDGFNRSIHEVILR
NITWYSERVLTEISLGSLLILVVIRTIQYNMTRTRDKYLHTNCLAALANMSAQFRSLHQYAAQRIISLFS
LLSKKHNKVLEQATQSLRGPLSSSDVPLPDYAQDLSVIEEVIRMMLEIINSCLTNSLHHNPNLVYALLYK
RDLFEQFRTHPSFQDIMQNIDLVISFFSSRLLQAGAELSVERVLEIIKQGVVALPKDRLKKFPELKFKYV
EEEQPEEFFIPYVWSLVYNSAVGLYWNPQDIQLFAMDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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