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Report for CCDS20827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20827.1 Public Mus musculus 7 Vmn1r85 23 108 98 CCDS HistoryNCBI Gene:252909Re-query CCDS DB by CCDS ID:20827.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20827.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094829.1 ENSMUSP00000092424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094829.1Link to Ensembl Protein Viewer:ENSMUSP00000092424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000094829Re-query CCDS DB by Protein ID:ENSMUSP00000092424
Original member Current member EBI ENSMUST00000209822.2 ENSMUSP00000148178.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209822.2Link to Ensembl Protein Viewer:ENSMUSP00000148178.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209822Re-query CCDS DB by Protein ID:ENSMUSP00000148178
Original member Current member EBI ENSMUST00000235753.1 ENSMUSP00000157899.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235753.1Link to Ensembl Protein Viewer:ENSMUSP00000157899.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235753Re-query CCDS DB by Protein ID:ENSMUSP00000157899
Original member Current member NCBI NM_145847.1 NP_665846.1 Accepted alive Link to Nucleotide Sequence:NM_145847.1Link to Protein Sequence:NP_665846.1Re-query CCDS DB by Nucleotide ID:NM_145847Re-query CCDS DB by Protein ID:NP_665846Link to BLAST:NP_665846.1

Chromosomal Locations for CCDS 20827.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13084289 13085215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGTTGTTTCCAAGCAACACTATCTTGGGGGTTTTCGTCATATCTGAGTTTTGTGTGGGAGTCTTAGGGA
ACTCATTGCTCCTCATGCTGTATATATTCAACTTCTGGGTCAAAGCTCGCTTTAACAGACAGATCGATCC
CATTTTCATGCACCTGATGATAGTCAATATGTTGACAATCATATTTGCTATGATACCATATATCACATCA
TCCTTTGGAGTGCCTAGTTTTCTGCATGATGCTGGCTGTAAGGCCTTTGTGTATATCTATAGAGTCTCCC
GGGCTATGTCCATCTCTAGCACTTCTATTCTAAGCACATTCCAGGCCATCACCATCACTCCCAGTAATTC
TAAGTGGGCGTGGCTTAAGCCTAAACTCTCTAAGTGGACTTTTTGCACCTTCCTGTTTTCCTGGTTCATC
AACATGGTCATATATGTGCACCTGATTGAGAATGTAATAGCAAAAACTAATTACACTGGTGTTAATTATG
GATATTCTCATGTTTACTGTGAAAGTAGTCCAGTTGAGTACCCCAATCCAGGATTTTTCCTCGGCGTTAT
CATAACAAGAGACCTTGTCCTTCTGGTCATCATGATGTGGACCAGCCTCTCCATGGTGACCCTCCTCTAC
AGGCATCACAAGAGAGCCCAGCATCTCCGCAACCCAAGACTCTCCTCTCAGAAGTCTCCAGAACACAAAG
CCACTCACACAATCCTGTTGCTTGTAAACTGCTTTGTGTTCTTTTATTTGTTGAACAACTTAATCACCCT
TTATGATAGGTTTTATACACGTGGAAGAACAGGAAATCTGGGGGCAATTATCACAATTGTGGCATCATTT
TACCCTACTCTCTGCCCATTTTTACTAATGAACAGTAATAAAATGTATTTCTTCCCTTCCTATATTCAAA
GAGCCATTGGTGACTGA

Translation (308 aa):
MLFPSNTILGVFVISEFCVGVLGNSLLLMLYIFNFWVKARFNRQIDPIFMHLMIVNMLTIIFAMIPYITS
SFGVPSFLHDAGCKAFVYIYRVSRAMSISSTSILSTFQAITITPSNSKWAWLKPKLSKWTFCTFLFSWFI
NMVIYVHLIENVIAKTNYTGVNYGYSHVYCESSPVEYPNPGFFLGVIITRDLVLLVIMMWTSLSMVTLLY
RHHKRAQHLRNPRLSSQKSPEHKATHTILLLVNCFVFFYLLNNLITLYDRFYTRGRTGNLGAIITIVASF
YPTLCPFLLMNSNKMYFFPSYIQRAIGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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