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Report for CCDS13900.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13900.2 Public Homo sapiens 22 PRR14L 24 110 108 CCDS HistoryNCBI Gene:253143Re-query CCDS DB by CCDS ID:13900.2See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 13900.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available transcript and protein data. Conservation among mammals supports the exons of this splice variant and the update is also supported by the mRNA, CT841517.1, with additional 5' exons supported by overlapping human ESTs.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13900.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327423.11 ENSP00000331845.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327423.11Link to Ensembl Protein Viewer:ENSP00000331845.6Re-query CCDS DB by Nucleotide ID:ENST00000327423Re-query CCDS DB by Protein ID:ENSP00000331845
Original member Current member NCBI NM_173566.3 NP_775837.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173566.3Link to Protein Sequence:NP_775837.2Re-query CCDS DB by Nucleotide ID:NM_173566Re-query CCDS DB by Protein ID:NP_775837Link to BLAST:NP_775837.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775837.2 2151 Q5THK1-1 2151 100% 0 0

Chromosomal Locations for CCDS 13900.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31685527 31685803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31688156 31688227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31701656 31701762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31703550 31703721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31704655 31704726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31712083 31717291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31725538 31725610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31738387 31738860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6456 nt):
ATGCTGTCATCTGGAGTAGAGACTCAGCCAGTTCCACTTGATTCCTCCATGTCTGCCGTGGTACAGGAAT
TA
TACTCTGAACTCCCAGTAAGTGTCTCCAGAGAGCTTCATGCTGACCCTGAGCCAAGTGTGATTCCAGA
T
GTAAAACCTGGAGCCTCAAGCTCTCTTTTAAGTCAGAATAGGGCATTGCCCTTGGAGCTGCAGAGGACT
CAT
GTGGAGAGTTGTTGTGAAGAAACCTATGAGACCTTGGATCATGGGAGTGAGCCTGGGCGATGTGGGC
TA
GTGGACTCCACAGCAGGAGGTTCTGTGGCATCTGGGATCTTGGATAGGGCAAAGAGAAGCGAGAGCAT
G
GAGCCAAAGGTCTTCAGAGATCCAGGGGGCCAGGCAGGAATTATAAGAGAACCCTCTGAGGGAGCAAAG
GAA
GATCCACATCAACATTCCACAGCTGCTGAAGAAAAGACTAGCCCGAGTCAGGAGGATCTCCTGATGC
AG
TCCAGCAAAGAACTTTCACATGTGGACCTCCCTGAAGATTTTCTAAGGAGCAAAGAAGGAAATGTACA
G
ATTACAGCTGAAACTCTGCTAAAATCCGCCGAAGTACAAGGTATGAAGGTCAATGGGACTAAGACGGAT
AAT
AATGAAGGACACAAAAATGGCAATGTGAGTAAAGATCTCTCAGCTGGATGCGGTGAATTCCAAGAAG
TA
GACAAAATCATGACCAGTGATGAGGTTTCAGAAACCAGCACATTAGTTACCCCAGAACCTTTAACCTT
T
GTGGACCCTGTATTAACAGAAGCAACTCCTAAAGAAAAAGAATGTGAAGAATTAAAAAGTTGTCCTTGG
TTG
TCATTACCAGGAAACAGTGCCATTTCTAATGTGGACAATGGGAAGGAAGAGTTGTGTAAACCAAACC
TG
GTCTGTGAAGCAGATGACAATCACCAACAGCTTCATGGCCACCATAATGAACAACCCAGTTCTACACA
T
GATAGTCCCACAGCCACAAGCCCTTTGAAAGAAAATTCTGAAGTTTCATGTTTCACATCAGACTTGTCT
GGT
CCAGAATCCAGAACAATATCCTTAGAAAACTGTGGTTTTGAAGGTGGTGGTTTGCTAAAGAGATCTG
CT
GAAAAGACAGACAGTTCTTATTTTTATAGGGGGGATGATCAAGGGAAGAACTTGGCTTCTAGAGAAGA
A
AATGAGGAACGGCTTTTGATTCCTAGGAGTGAAAGAGGTGGACCTTTTCTTTTTAATGCCAGGGAACCA
GAA
AAGGAGATTAGTGGTCGTTGTTCTGGTGAAAAAGAGCCTGTTGTTTCTCCAAAGGAAAATATCCACA
AT
AACTGCATTCAAGACAGTCTCCATACAGGGAACTCTAGTTCTTTAATGCCCAATTCTTTTACTGAAGC
C
ACAGAAGTAATGTTAAATAAAAATGATTTGAAAATTACTGTACACGTTCAAGGTAACTTGACAAACCCT
GAG
GACCATAAAGAAACTTTTACTAATATGAGCCATCCTGGTGGACACTCTGAAGAAAGCAGTTTTTCCT
CC
TTGATGCAGATTGAAGAGGCAGGACAGACAACCCCTGTAGAGCCCAATATATTAAGTAAATCTTTTTA
C
ACTAAAGACTGTAACTCCTTAGTCAGCATCCAGAGAAATCTGGAAGGCAACACCCAGTTAAATGAAGCA
TCA
TGTAATGATTTTCTGTTTGAAAGAAAATCCATTGTGAGTTTAATGCCAGAGGATCAAATAAGTCCTG
TA
AGTGAGGTATTAAAACCCAAGCAAGGTACTGCTCTGTTGCTACCATCCCCAGAATTTGATTACAGACC
T
GAGTCAGAAAAAGTTATACAGACCTCACATGATGATATTCCACTTTTAGATGAACAGAGCATAGCCTGT
GAG
ATGAATGAACTTTCTTGTACCAATGAACTGGTTGTAAACAAAGTAGAAAGTGAATGTGTTTTAAATC
AA
CAAGTGTCCCTTAATTCTCAAGAACATGCAAATTTGCCAACTGACTCTCTACTGCATTTAAACAAAGA
G
ATGCCTTTAGCAACAGGCAGAGATGCCCATCAGAGCCATCACCCTCCATTAGAGGGTAGAGCAGATGTC
ATT
GCTGATATACAAACCATTCCCATTCAGACAAAAATAAAAGACATCTCTCCACCAGGTAACCAAACCT
GT
GGTGCCTCTTCAAACTGTCCCACCTTAAACATCAAACCAGTAAGCCTAGAGAGAAAAAAGGAAATGGC
T
GATTCAGGAACAAAAGCTCTACATTCCAGGCTGCGCTCAAATAAGAGAGAAGCAGCTGGCTTTCCTCAA
GTG
GTCTCTGTCATAGAATGTCACAGCGTTCAATCTCAGGATATCTCTAGCTGTCATCGTGTAAGAAAAA
AT
GTATCCCAGGAAAACATGTGTTCTGCTTCTGCTGCTTTCAAGTCCAGCAAAATCAGCCTGCAAGTTGA
T
AACTCTTTGATAACAAAATATGAAAATGCATTTCAGCACCGTGATCACTGCTGCCAAGGAACAGGACAC
TCT
GTGGAAAAAAGCAGCTGTAAAGTGAGTTACACATCACAGGAAAGGGAACTTGATGGGAAAGAAACGA
AT
GGCAGCCTTCCAGGAGATAAGATCAGAAACAAAATGGTAGCAGGCTTGTTAAATAGTGGAATTTCAAA
C
AAAACCATTCACACCTCCAGTAGCATCAAACTCAGTGAGGAAGGGCTGGAAGGAAAGGAGCAGGATGTA
TCC
AAAGAAACTGTATTTTGTAAGTATAACATCTCTGATCATGCTATACAAGAACTAAACCAGACTGTAA
AC
ATTCCAGGTCCTGAAAAAGTGTTGGACCAGTCTCCTACTGTTATGTTCTCCAGTTTTAAAAATGTAAA
A
TCAGTTGAAACACTCGATCAGAAGGCAGATGAAGTCCTTGACTGTCAGAGTAACCAAAACAGACCAGAT
GAA
TGCAAAAGTGAAGGTCAGTCAGCCAAGGAGATGCTAAGTAGTGACCAGAGAGAGACTGTCACCGAGC
CT
CACGGGGAGGTAAACCACAACCAAAAGGATCTGCTGGTCAGCTCAGGCAGTAATAACTCACTACCTTG
T
GGTAGTCCAAAGAAATGCAATTTGAAAGGAGCCTTTGTCAAGATGTCTGGTTGTGATGAGTCCACAGAA
GGT
ATGGTAGACATCGTCTACACGGACTGTAGTAATAAGCTTGCAGAAGGTGTGCTGGACGTGAAGGCAT
CT
AATCTACTGGATTGTGGTGCAAGGCAAGAGAAACTGGCATTTCAAGAGGACTCCAGGAGTACCTTGTC
T
CGGAGAGAACTGGATGCTGCACATACAGGAACAACTGGTCAGGATTCAGATTTCCCAGTTACTGCTGCT
TCT
ACAGTGGACTTTCTCAAAATAAAAAAATCATGTGAAGAAAACGTATGCAGATCTTTAAAAGACTGTG
AA
ATGGAAAAGTGTCCAGACTCTTGTGCCCATGAGATGGAGTCTGTTGCAGATCATGAACCAAATAAAAG
A
ATATTGGGCAGAGTAAATTTGTCTTTAAATGATAGCCATTATGGACAGCAAGATAAAGGAACATCTCTC
AGA
GAAACACAAGAAATGACTGAAGGATCAAGACTAGAACCAAACTCTGAGTTTGGCAAAGAAAGTACCT
TT
GGAATTTCCTCAAAAGAGTCGATGTCTTGCCATGATGAAAGCTCTGTTTCCCTAAGAAGCCTGAAATC
C
ATTGAAATAATGCCTTCTCAAGAAAATTCAGAAACTAATGTTAACAGTGAAGAAACTGACCTGAAAAAT
CTT
TGTAAACCAAAAGATGGTGAAATGCTTTGTGAAAATGTAAAGGACTGCACAGTCCTTCCTGAGATGA
AG
GAAATAGTATCAAGAGATTGGAGTAATTCTAGTGACAGAGACAGCGTATGTACCTGTGTGGAAAAGAA
T
GCTTGCAAAGCTTGTCACCCTCACGAGAATTCCTCTGACAGACATTTGCCTTTGACAGTGAAAACAGAT
ATT
AAAGTGAAAGGAGAAGAAACCGAAGAGCATCAGAGGGGACGACTGGGTTACTTAACTGTTGGGGAGC
AA
TCTGAGGAGTTGGTTACCAGAGAAACTGGCGATGGCGATCCCGTGAGCAACATCTCTCAGACCCATTT
T
AAATGCCGGGGGATACTTAATCATGCTGAAAAACAGCAGAGCCCTGAGGTTTTGGACTACATGTTGCAG
AAA
GAAGAGAAATATATACGTCAACAAAAAGCACATACGATATCGCAACAGTGCATATCATCTAGTCTGT
TG
TTAGATGATGCACAAAATCAGAACCAACCGAAGGCTGACAAAGATGAGTCCACCATGATCAATGAAAT
C
ACCCTAGCAAAGCTGGCCAAGGACAGCATTGTGGCACAGACTCAGAAGTTAGAAGACCAGAAGGAGGAA
AGG
TTACATCATCCATTAAGGAAGGACACTGAGTCATGCACAAGTCCTTGCCTTCTTGGTGCCCCTCGGA
AA
GCACAAGACCCCTCCTCTGCTGGGTGTGATCAAATACATGGTGCCTTTGCGAAGAAAGGAGTTCTTCC
C
TTAAAGAAGCAGCCCCATCGAACTTGTAAGAAAGTTTCCTATCAGGAGCAAATCATTGTTGGGAGAAAA
ATA
GGTAAAATCAGAAGTTCTGCCTTTTTAAAGAGTTCTTCCAATCCCATCCCCACAAAAGCGCACAGAC
TT
CTCAGTTTGTGTACTCTGTCTGCACCTACACGATTAGAACCTGAAACAGCACCTACCAAGAGCTTGGT
T
AGTCACATACCAAAGCAGATGTCTACACCGTGCCATCCCTTGAGGAGCCTGAATTTTAGGAAGACTACC
AAA
GAATCAGCCTTACTAAACAAGCTGTCCATCCTTGCCTCCAAACTGGCCCCAGCCATGAAGACTCAGA
AG
CTAAGATACCGACGGTGTTCCTCTGAACTTCTTCCAATGGCTAAAAGCTACAAGCGCCTCAGATATAA
A
AGACTCCTGGACGGATTTTCATCCAGCACAGAGCAGCTGAATCCATATTTGGCAGCTAGTGGATGGGAT
AAG
AGGCCTAACAGTAAGCCCATGGCACTTTATTCTCTCGAATCCATCAAGATGACCTTCATAGATTTGA
GC
AACAAGATGCCGTCCCTGCTGTTTGGTTCTGAAATCTTCCCAGTATCCTTTCATGTGAAATCATCCAG
C
TCAGATTGCACGACTGAGTCCTCAAGGACTTTTCCTGAGCACTGTGCTCCGGCAAGGCTTGCCTTAGGA
GAG
GCCCTCCAGTGCCCGTCTCAACCTCCCAAGTGGACCTTTTCTTTCTTCTTGTCCCACGGTTGCCCTG
GG
ATGGCAACATTCAGGGAAGACACTGGCGTCCATAGTCAGACCCACACTCAGGCTCCTCCCCAGCCTCC
A
GCTCCTCTCCAAGACTATGGAGGCACTGCCATAGTCCAGACCAGAGCAGACTGCTCTGTCCTTGGCCTT
CAC
ACACTTCTAGCACTTTGTTCCCCAGGATGTTACCGAATCTGGACAAAAAAACGGAGCTTCTCCAGCC
AC
ATGCCTACCATGCAGAGGCTCTTCATGACCCAGTTTACACAGGGCCTGAAAGGGTTACGGTCTCCAGC
C
TCCATAGCAGACAAGGTCTTCTGTTCTCTGCCCTACTCGGTGGGCAGAGTCCTATCCATTTGGAGCCAG
CAT
GGTCCTTCTGTCTGCTCCTTCGAAATCTCTTCTCTTCATTCCCCTCACTGCAAGCGGCAACCAAGTC
TG
GGCACCACAAGCAGCCACACCATGTTACCATATGTGCCTCTTCCAGGCATGGAAGCTACATATAACAC
C
AGCGGCAGTCAGACGAGGCTGGAGCCTCCATTCCCTGCCTTGGTACCAAAGTCTTGCTTGGTAGCAGAA
TCA
GCTGTCAGCAAGCTCCTGCTTTCAGCCTCTGAGTTCCAGGTTCGTGGATTGGATGAGCTGGATGGTG
TG
AAAGCAGCATGCCCCTGCCCACAGAGCAGCCCCCCAGAACAGAAAGAGGCTGAGCCAGAGAAGAGGCC
A
AAGAAAGTCTCACAGATTCGCATCCGGAAAACCATTCCTAGGCCAGATCCTAATCTTACCCCCATGGGC
CTT
CCTCGACCCAAAAGGTTAAAGAAGAAGGAGTTTAGTTTAGAAGAGATATATACCAACAAGAATTATA
AA
TCTCCTCCTGCAAACAGGTGTTTAGAGACCATCTTTGAGGAACCCAAGGAACGAAATGGTACACTAAT
C
TCAATCAGCCAACAGAAGAGGAAGCGAGTTCTAGAATTTCAGGATTTTACAGTCCCGCGAAAGAGGAGA
GCT
CGAGGCAAAGTCAAGGTGGCAGGCAGCTTTACCAGGGCCCAGAAGGCAGCTGTGCAGAGTCGAGAGC
TG
GATGCTCTTTTGATACAGAAACTAATGGAACTGGAGACCTTCTTTGCCAAGGAAGAGGAGCAGGAACA
A
TCATCAGGCTGTTGA


Translation (2151 aa):
MLSSGVETQPVPLDSSMSAVVQELYSELPVSVSRELHADPEPSVIPDVKPGASSSLLSQNRALPLELQRT
H
VESCCEETYETLDHGSEPGRCGLVDSTAGGSVASGILDRAKRSESMEPKVFRDPGGQAGIIREPSEGAK
E
DPHQHSTAAEEKTSPSQ
EDLLMQSSKELSHVDLPEDFLRSKEGNVQITAETLLKSAEVQGMKVNGTKTD
N
NEGHKNGNVSKDLSAGCGEFQEVDKIMTSDEVSETSTLVTPEPLTFVDPVLTEATPKEKECEELKSCPW
L
SLPGNSAISNVDNGKEELCKPNLVCEADDNHQQLHGHHNEQPSSTHDSPTATSPLKENSEVSCFTSDLS
G
PESRTISLENCGFEGGGLLKRSAEKTDSSYFYRGDDQGKNLASREENEERLLIPRSERGGPFLFNAREP
E
KEISGRCSGEKEPVVSPKENIHNNCIQDSLHTGNSSSLMPNSFTEATEVMLNKNDLKITVHVQGNLTNP
E
DHKETFTNMSHPGGHSEESSFSSLMQIEEAGQTTPVEPNILSKSFYTKDCNSLVSIQRNLEGNTQLNEA
S
CNDFLFERKSIVSLMPEDQISPVSEVLKPKQGTALLLPSPEFDYRPESEKVIQTSHDDIPLLDEQSIAC
E
MNELSCTNELVVNKVESECVLNQQVSLNSQEHANLPTDSLLHLNKEMPLATGRDAHQSHHPPLEGRADV
I
ADIQTIPIQTKIKDISPPGNQTCGASSNCPTLNIKPVSLERKKEMADSGTKALHSRLRSNKREAAGFPQ
V
VSVIECHSVQSQDISSCHRVRKNVSQENMCSASAAFKSSKISLQVDNSLITKYENAFQHRDHCCQGTGH
S
VEKSSCKVSYTSQERELDGKETNGSLPGDKIRNKMVAGLLNSGISNKTIHTSSSIKLSEEGLEGKEQDV
S
KETVFCKYNISDHAIQELNQTVNIPGPEKVLDQSPTVMFSSFKNVKSVETLDQKADEVLDCQSNQNRPD
E
CKSEGQSAKEMLSSDQRETVTEPHGEVNHNQKDLLVSSGSNNSLPCGSPKKCNLKGAFVKMSGCDESTE
G
MVDIVYTDCSNKLAEGVLDVKASNLLDCGARQEKLAFQEDSRSTLSRRELDAAHTGTTGQDSDFPVTAA
S
TVDFLKIKKSCEENVCRSLKDCEMEKCPDSCAHEMESVADHEPNKRILGRVNLSLNDSHYGQQDKGTSL
R
ETQEMTEGSRLEPNSEFGKESTFGISSKESMSCHDESSVSLRSLKSIEIMPSQENSETNVNSEETDLKN
L
CKPKDGEMLCENVKDCTVLPEMKEIVSRDWSNSSDRDSVCTCVEKNACKACHPHENSSDRHLPLTVKTD
I
KVKGEETEEHQRGRLGYLTVGEQSEELVTRETGDGDPVSNISQTHFKCRGILNHAEKQQSPEVLDYMLQ
K
EEKYIRQQKAHTISQQCISSSLLLDDAQNQNQPKADKDESTMINEITLAKLAKDSIVAQTQKLEDQKEE
R
LHHPLRKDTESCTSPCLLGAPRKAQDPSSAGCDQIHGAFAKKGVLPLKKQPHRTCKKVSYQEQIIVGRK
I
GKIRSSAFLKSSSNPIPTKAHRLLSLCTLSAPTRLEPETAPTKSLVSHIPKQMSTPCHPLRSLNFRKTT
K
ESALLNKLSILASKLAPAMKTQKLRYRRCSSELLPMAKSYKRLRYKRLLDGFSSSTEQLNPYLAASGWD
K
RPNSKPMALYSLESIKMTFIDLSNKMPSLLFGSEIFPVSFHVKSSSSDCTTESSRTFPEHCAPARLALG
E
ALQCPSQPPKWTFSFFLSHGCPGMATFREDTGVHSQTHTQAPPQPPAPLQDYGGTAIVQTRADCSVLGL
H
TLLALCSPGCYRIWTKKRSFSSHMPTMQRLFMTQFTQGLKGLRSPASIADKVFCSLPYSVGRVLSIWSQ
H
GPSVCSFEISSLHSPHCKRQPSLGTTS
SHTMLPYVPLPGMEATYNTSGSQTRLEPPFPALVPKSCLVAE
S
AVSKLLLSASEFQVRGLDELDGVKAACPCPQSSPPEQKE
AEPEKRPKKVSQIRIRKTIPRPDPNLTPMG
L
PRPK
RLKKKEFSLEEIYTNKNYKSPPANRCLETIFEEPKERNGTLISISQQKRKRVLEFQDFTVPRKRR
A
RGKVKVAGSFTRAQKAAVQSRELDALLIQKLMELETFFAKEEEQEQSSGC




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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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