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Report for CCDS28120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28120.1 Public Mus musculus 16 Pcyt1a 23 108 98 CCDS HistoryNCBI Gene:13026Re-query CCDS DB by CCDS ID:28120.1Re-query CCDS DB by GeneID:13026See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079791.10 ENSMUSP00000078721.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079791.10Link to Ensembl Protein Viewer:ENSMUSP00000078721.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079791Re-query CCDS DB by Protein ID:ENSMUSP00000078721
Original member Current member EBI ENSMUST00000115140.1 ENSMUSP00000110793.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115140.1Link to Ensembl Protein Viewer:ENSMUSP00000110793.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115140Re-query CCDS DB by Protein ID:ENSMUSP00000110793
Original member Current member EBI ENSMUST00000104893.9 ENSMUSP00000130056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104893.9Link to Ensembl Protein Viewer:ENSMUSP00000130056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000104893Re-query CCDS DB by Protein ID:ENSMUSP00000130056
Original member Current member NCBI NM_001163159.1 NP_001156631.1 Accepted alive Link to Nucleotide Sequence:NM_001163159.1Link to Protein Sequence:NP_001156631.1Re-query CCDS DB by Nucleotide ID:NM_001163159Re-query CCDS DB by Protein ID:NP_001156631Link to BLAST:NP_001156631.1
Original member Current member NCBI NM_001163160.1 NP_001156632.1 Accepted alive Link to Nucleotide Sequence:NM_001163160.1Link to Protein Sequence:NP_001156632.1Re-query CCDS DB by Nucleotide ID:NM_001163160Re-query CCDS DB by Protein ID:NP_001156632Link to BLAST:NP_001156632.1
Original member Current member NCBI NM_009981.4 NP_034111.1 Accepted alive Link to Nucleotide Sequence:NM_009981.4Link to Protein Sequence:NP_034111.1Re-query CCDS DB by Nucleotide ID:NM_009981Re-query CCDS DB by Protein ID:NP_034111Link to BLAST:NP_034111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156631.1 367 P49586 367 100% 0 0
NP_001156632.1 367 P49586 367 100% 0 0
NP_034111.1 367 P49586 367 100% 0 0

Chromosomal Locations for CCDS 28120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32451715 32451831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32455212 32455311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32462001 32462117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32463031 32463182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32466440 32466518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32467078 32467220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32470051 32470239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32471297 32471503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGATGCACAGAGTTCAGCTAAAGTCAATTCGAGGAAGAGGAGGAAAGAGGCACCTGGCCCTAATGGAG
CAACAGAGGAAGATGGAATTCCTTCCAAAGTGCAGCGTTGCGCAGTTGGTTTACGGCAGCCAGCTCCTTT
TTCTGATGAAATTGAAGTTGACTTTAGTAAGCCCTATGTCAGGGTGACTATGGAAGAAGCCTGCAGGGGA
ACTCCGTGTGAGCGGCCTGTGAGAGTTTATGCGGATGGAATATTTGACTTGTTTCACTCTGGTCATGCCC
GGGCTCTGATGCAAGCAAAGAACCTTTTCCCTAATACGTATCTAATTGTGGGAGTCTGCAGTGATGAGCT
AACGCACAACTTCAAGGGCTTCACTGTGATGAACGAGAATGAGCGCTATGACGCCGTGCAGCACTGCCGC
TACGTGGACGAGGTGGTGCGGAACGCCCCCTGGACTCTGACGCCTGAGTTCCTGGCAGAGCACCGGATTG
ATTTTGTCGCCCATGACGACATCCCCTATTCTTCTGCAGGGAGCGATGATGTGTATAAGCACATCAAGGA
CGCAGGCATGTTTGCTCCCACACAGAGGACAGAAGGTATCTCCACATCAGACATCATCACCCGCATTGTC
CGTGACTATGATGTGTATGCAAGACGGAACCTACAGAGGGGCTACACTGCCAAGGAGCTCAATGTCAGCT
TTATCAACGAGAAGAAATACCACTTGCAAGAACGAGTTGATAAAGTAAAGAAGAAAGTGAAAGATGTGGA
GGAAAAGTCAAAAGAGTTTGTGCAGAAGGTGGAAGAGAAGAGCATCGACCTCATCCAGAAGTGGGAGGAG
AAGTCCCGAGAGTTCATTGGAAGTTTCCTGGAAATGTTTGGTCCAGAAGGAGCACTGAAGCACATGCTGA
AGGAGGGAAAAGGTCGGATGCTGCAGGCCATCAGTCCCAAGCAGAGCCCCAGCAGCAGCCCTACTCATGA
GCGCTCCCCCTCCCCCTCCTTTCGGTGGCCCTTCTCTGGCAAGACTTCCCCATCTTCCTCCCCAGCAAGT
CTTTCTAGGTGCAGGGCTGTGACCTGTGACATCAGCGAGGATGAAGAGGACTAA

Translation (367 aa):
MDAQSSAKVNSRKRRKEAPGPNGATEEDGIPSKVQRCAVGLRQPAPFSDEIEVDFSKPYVRVTMEEACRG
TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCR
YVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKDAGMFAPTQRTEGISTSDIITRIV
RDYDVYARRNLQRGYTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIQKWEE
KSREFIGSFLEMFGPEGALKHMLKEGKGRMLQAISPKQSPSSSPTHERSPSPSFRWPFSGKTSPSSSPAS
LSRCRAVTCDISEDEED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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