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Report for CCDS51678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51678.1 Public Mus musculus 5 Smok3a 23 108 98 CCDS HistoryNCBI Gene:545814Re-query CCDS DB by CCDS ID:51678.1Re-query CCDS DB by GeneID:545814See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085886.2 ENSMUSP00000083049.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085886.2Link to Ensembl Protein Viewer:ENSMUSP00000083049.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085886Re-query CCDS DB by Protein ID:ENSMUSP00000083049
Original member Current member EBI ENSMUST00000171498.2 ENSMUSP00000125938.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171498.2Link to Ensembl Protein Viewer:ENSMUSP00000125938.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171498Re-query CCDS DB by Protein ID:ENSMUSP00000125938
Original member Current member NCBI NM_001126045.1 NP_001119517.1 Accepted alive Link to Nucleotide Sequence:NM_001126045.1Link to Protein Sequence:NP_001119517.1Re-query CCDS DB by Nucleotide ID:NM_001126045Re-query CCDS DB by Protein ID:NP_001119517Link to BLAST:NP_001119517.1
Original member Current member NCBI NM_001168602.1 NP_001162073.1 Accepted alive Link to Nucleotide Sequence:NM_001168602.1Link to Protein Sequence:NP_001162073.1Re-query CCDS DB by Nucleotide ID:NM_001168602Re-query CCDS DB by Protein ID:NP_001162073Link to BLAST:NP_001162073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001119517.1 504 C0HKC8 504 100% 0 0
NP_001162073.1 504 C0HKC8 504 100% 0 0

Chromosomal Locations for CCDS 51678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138032376 138033890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGGCCCTGGGAGTCAACAGAAGTCAGAAAAGCTCAGATCCAAGTCCCCTTTGGCTGACATGGATGGTT
TGCATGCTCAATATGTGATGCTAGAGACTATCGGCCATGGAGGCTGTGCCACAGTGAAGCTGGCCCAGCA
CCGCCTCACAGGCACTCACGTGGCTGTCAAAACGATTCGAAAGAGGGAGTATTGGTGCAACCGTGTCATT
TCTGAGGTAGAGTTACTGATGATGGCCGATCATCCGAATATCATCTCTCTCCTTCAAGTCATTGAGACCA
AGAAGAAAGTATACCTCATTATGGAGTTGTGCAAGGGTAAATCACTTTACCAACACATCCGAAAAGCTGG
CTACCTGCAGGAGCATGAAGCACGCGCATTATTCAAGCAGCTCTTAAGTGCTATGAACTACTGCCACAAC
CAGGGTATAGTTCACAGGGACCTGAAACCGGACAATATCATGGTTGAAAAAGATGGGAAAGTGAAGATCA
TTGATTTTGGACTCGGCACCAAAGTGAAGCCAGGGCAAAAACTCAACTTATTCTGTGGGACTTACCCATT
TAGTGCTCCTGAGGTGCTCCTTAGCACACCCTATGATGGGCCCAAGATCGATGTATGGACTCTTGGAGTT
GTGCTGTATTTTATGGTAACTGGAAAGATCCCGTTTGATGCTTGCAGCATAAAAAAGCTGGTAAAGCGAA
TTCTTGCAGGAAAGTATTCTATTCCCTCTAGACTGTCAGCAGAGCTCCAAGACCTGCTTAGTCTTTTAAT
GACGGCCAACCCCAAACTCAGGCCCACTGTTGCTGAGGTTATGGTGCATCCCTGGGTCACAGAAGGCTCA
GGGGTGTTCCCAGATCCTTGTGAAGAACAGACCCCCCTCAAGCCAGACCCTGCAATTGTAAAAGCAATGG
GACATATCGGGTTCCAAGCTCAAGATATTGAAGATTCGTTACGTCAGAGAAAATTCAACCAAACCATGGC
GTCTTATTGTCTACTGAAAAAACAGATTCTTAAGGAATGTGACAGGCCAACCCGGGCTAGGCCCGTGAAC
CCATCGGTGACCCCATTCCCTTCCCTTGTTGATACTGCTACTACCCGTCTCGGACTTCGCAGGAGAGAGA
ATGAACCCACATGTCCCTGGTCATCCGCCAATAGGCAAGTGTCTGTCTGTGGCAAGAGTACTAGTAAGAA
AAGAGACAGAAGAGTCAGTTGGCCCAGTGTTCTCGGCAGGCCACGCCACACGGCACCCACAATGGACCAC
ACACGCACCCGTACTAGGAGTGTACCCTGCATTTGCTCAATGTTTTGCACAGTCCAGCCAAACAGCAGCG
AAGAGAGCACACAAGGCCACACCAGAGCCTCAGCAGCAGATAAGCCTGTCCACAGCAGGGGCTGGCCCAG
AGGCATCAAGGGCTGGACGAGGATGATAGGAAATGCGATGAGGAAGCTCTGTTGCTGTATCCCATCCAAA
GAGACATCTCACCTGGGGCAGAACAGAGTCTCCCCCAAAAAATAA

Translation (504 aa):
MGPGSQQKSEKLRSKSPLADMDGLHAQYVMLETIGHGGCATVKLAQHRLTGTHVAVKTIRKREYWCNRVI
SEVELLMMADHPNIISLLQVIETKKKVYLIMELCKGKSLYQHIRKAGYLQEHEARALFKQLLSAMNYCHN
QGIVHRDLKPDNIMVEKDGKVKIIDFGLGTKVKPGQKLNLFCGTYPFSAPEVLLSTPYDGPKIDVWTLGV
VLYFMVTGKIPFDACSIKKLVKRILAGKYSIPSRLSAELQDLLSLLMTANPKLRPTVAEVMVHPWVTEGS
GVFPDPCEEQTPLKPDPAIVKAMGHIGFQAQDIEDSLRQRKFNQTMASYCLLKKQILKECDRPTRARPVN
PSVTPFPSLVDTATTRLGLRRRENEPTCPWSSANRQVSVCGKSTSKKRDRRVSWPSVLGRPRHTAPTMDH
TRTRTRSVPCICSMFCTVQPNSSEESTQGHTRASAADKPVHSRGWPRGIKGWTRMIGNAMRKLCCCIPSK
ETSHLGQNRVSPKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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