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Report for CCDS18178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18178.1 Public Mus musculus 4 Rnf20 23 108 98 CCDS HistoryNCBI Gene:109331Re-query CCDS DB by CCDS ID:18178.1Re-query CCDS DB by GeneID:109331See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029989.10 ENSMUSP00000029989.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029989.10Link to Ensembl Protein Viewer:ENSMUSP00000029989.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029989Re-query CCDS DB by Protein ID:ENSMUSP00000029989
Original member Current member EBI ENSMUST00000167496.7 ENSMUSP00000128546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167496.7Link to Ensembl Protein Viewer:ENSMUSP00000128546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167496Re-query CCDS DB by Protein ID:ENSMUSP00000128546
Original member Current member NCBI NM_001163263.1 NP_001156735.1 Accepted alive Link to Nucleotide Sequence:NM_001163263.1Link to Protein Sequence:NP_001156735.1Re-query CCDS DB by Nucleotide ID:NM_001163263Re-query CCDS DB by Protein ID:NP_001156735Link to BLAST:NP_001156735.1
Original member Current member NCBI NM_182999.2 NP_892044.1 Accepted alive Link to Nucleotide Sequence:NM_182999.2Link to Protein Sequence:NP_892044.1Re-query CCDS DB by Nucleotide ID:NM_182999Re-query CCDS DB by Protein ID:NP_892044Link to BLAST:NP_892044.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156735.1 973 Q5DTM8-1 973 100% 0 0
NP_892044.1 973 Q5DTM8-1 973 100% 0 0

Chromosomal Locations for CCDS 18178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 49633282 49633410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49637906 49638073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49638187 49638334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49638625 49638807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49642066 49642184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49644484 49644630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49645619 49645696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49645886 49646005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49648286 49648465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49649270 49649405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49649726 49649847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49649963 49650327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49651431 49651548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49652522 49652671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49653065 49653277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49654191 49654316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49654447 49654587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49655411 49655512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49655801 49655977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2922 nt):
ATGTCAGGAATTGGAAATAAAAGAGCAGCTGGAGAGCCGGGCACATCTATGCCTCCAGAGAAGAAGACAG
CTGTTGAAGATTCAGGGACCACCGTGGAAACAATTAAGTTAGGAGGTGTCTCTTCAACGGAGGAATTAGA
CATTCGAACACTGCAATCCAAGAATCGTAAGCTAGCAGAAATGCTAGATCAGCGGCAGGCCATTGAAGAT
GAGCTTCGGGAACACATTGAAAAGCTGGAGCGACGCCAGGCCACTGATGATGCCTCACTGTTGATTGTGA
ACCGGTACTGGAGCCAGTTTGATGAAAACATCCGCATCATCCTTAAACGTTATGATCTGGACCAGGGTTT
GGGGGACCTACTCACAGAAAGGAAAGCCTTGGTTGTGCCAGAACCAGAACCTGACTCTGATAGCAATCAG
GAACGCAAAGATGACCGTGAGAGAGGGGATGGGCAAGAGCCAGCTTTCTCTTTCCTTGCTACTTTGGCTA
GCAGTTCCAGTGAAGAGATGGAATCTCAGCTTCAGGAGCGTGTAGAGTCCTCCCGCCGTGCTGTGTCCCA
GATTGTGACTGTCTATGATAAATTGCAAGAAAAAGTGGATCTCTTATCCCGGAAACTGAACAGTGGAGAT
AACCTGATAGTGGAGGAAGCAGTGCAGGAGTTGAACTCCTTCCTTGCACAAGAGAATGTGAGGCTTCAGG
AGCTGACAGACCTCCTTCAGGAGAAGCATCACACCATGTCTCAGGAGTTCTGTAAGTTGCAGGGTAAAGT
AGAGACAGCTGAGTCACGAGTGTCCGTCTTGGAGTCCATGATTGATGACCTGCAGTGGGATATTGACAAA
ATTCGAAAAAGAGAACAGCGTCTCAACCGGCATTTGGCTGAAGTCCTAGAGCGGGTGAATTCAAAAGGCT
ATAAAGTATATGGAGCGGGGAGCAGTCTCTATGGAGGCACAATCACCATCAATGCCCGGAAGTTTGAGGA
AATGAATGCAGAGCTTGAGGAGAACAAAGAGTTGGCTCAGAACCGACATTGTGAGCTGGAGAAGCTTCGT
CAAGACTTTGAAGAGGTCACTACACAGAATGAAAAGTTGAAGGTGGAATTGCGGAGTGCAGTGGAGGAAG
TGGTTAAGGAAACCCCAGAGTATCGCTGCATGCAGTCACAGTTCTCTGTCCTGTATAACGAGAGTCTGCA
GTTGAAAGCCCACTTGGATGAAGCTCGGACCCTGCTTCATGGCACCCGGGGTACTCACCAGCGCCAGGTT
GAACTCATTGAGCGAGATGAGGTTAGTCTGCATAAGAAGCTGAGAACTGAAGTCATTCAGCTGGAGGATA
CCTTGGCCCAGGTTCGCAAGGAGTATGAGATGTTGAGGATAGAGTTTGAGCAGACCCTTGCTGCCAATGA
ACAAGCAGGCCCCATAAACCGGGAGATGCGGCATCTCATTAGCAGCCTCCAGAATCATAACCACCAGCTG
AAGGGTGAAGTCCTAAGGTATAAACGGAAGCTGAGAGAGGCGCAGTCTGACCTGAACAAGACACGTCTGC
GCAGTGGCAGTGCCCTCCTGCAGTCTCAGTCTAGTACTGAGGACCCCAAGGACGAGCCCACAGAGCTGAA
GCAGGATTCTGAAGACCTAGCCACTCATTCCTCAGCGCTGAAGGCATCTCAGGAGGATGAAGTTAAGTCC
AAACGGGATGAAGAAGAGAGAGAACGAGAAAGGAGGGAGAAAGAAAGAGAGCGAGAGCGAGAACGAGAAA
AGGAAAAGGAGAGAGAACGAGAGAAACAGAAACTGAAAGAGTCAGAAAAGGAGAGAGATTCTGTTAAGGA
TAAAGAGAAAGGGAAACATGATGATGGAAGGAAGAAGGAAGCAGAAATTATCAAGCAGCTGAAGATTGAA
CTTAAGAAAGCACAAGAGAGCCAGAAGGAGATGAAACTACTGCTGGATATGTACCGCTCTGCCCCCAAGG
AGCAGAGAGACAAAGTGCAGCTAATGGCAGCTGAGAAGAAGTCAAAGGCAGAGTTGGAGGATCTCAGACA
AAGACTCAAGGATCTGGAAGATAAGGAGAAGAAAGAGAACAAGAAAATGGCTGATGAGGATGCCTTGAGG
AAGATCCGGGCAGTGGAGGAGCAGATTGAATACCTGCAGAAGAAGCTGGCTATGGCCAAGCAGGAGGAAG
AGGCTCTCCTGTCTGAGATGGATGTCACAGGACAGGCCTTTGAGGACATGCAGGAGCAGAACATCCGTCT
GATGCAGCAGTTGCGGGAGAAGGACGATGCAAACTTCAAGCTCATGTCAGAGCGAATCAAGTCTAATCAG
ATCCATAAGTTGCTTAAAGAGGAAAAGGAAGAGTTAGCTGATCAGGTTTTGACACTGAAGACTCAGGTAG
ATGCCCAGTTACAGGTAGTAAGAAAACTGGAAGAGAAGGAGCACCTACTTCAGAGTAACATTGGCACAGG
GGAGAAGGAGCTGGGTCTTAGGACTCAAGCCTTGGAGATGAATAAACGCAAGGCAATGGAGGCGGCCCAG
CTTGCAGATGACCTCAAAGCACAGCTAGAACTGGCTCAGAAGAAGCTCCATGATTTCCAGGATGAAATCG
TGGAGAACAGTGTCACCAAAGAAAAGGACTTGTTCAATTTCAAACGAGCACAGGAAGACATCTCTAGGCT
TCGAAGAAAGCTAGAGACCACCAAGAAGCCAGACAATGTGCCCAAGTGTGATGAAATTCTGATGGAGGAG
ATAAAGGACTACAAGGCACGGCTGACCTGCCCTTGCTGTAACATGCGTAAAAAGGATGCAGTACTTACCA
AGTGTTTTCACGTTTTCTGCTTTGAGTGTGTGAAGACGCGCTATGACACTCGCCAGCGCAAGTGTCCCAA
GTGTAATGCTGCTTTTGGTGCCAATGATTTCCATCGCATCTACATTGGCTGA

Translation (973 aa):
MSGIGNKRAAGEPGTSMPPEKKTAVEDSGTTVETIKLGGVSSTEELDIRTLQSKNRKLAEMLDQRQAIED
ELREHIEKLERRQATDDASLLIVNRYWSQFDENIRIILKRYDLDQGLGDLLTERKALVVPEPEPDSDSNQ
ERKDDRERGDGQEPAFSFLATLASSSSEEMESQLQERVESSRRAVSQIVTVYDKLQEKVDLLSRKLNSGD
NLIVEEAVQELNSFLAQENVRLQELTDLLQEKHHTMSQEFCKLQGKVETAESRVSVLESMIDDLQWDIDK
IRKREQRLNRHLAEVLERVNSKGYKVYGAGSSLYGGTITINARKFEEMNAELEENKELAQNRHCELEKLR
QDFEEVTTQNEKLKVELRSAVEEVVKETPEYRCMQSQFSVLYNESLQLKAHLDEARTLLHGTRGTHQRQV
ELIERDEVSLHKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQTLAANEQAGPINREMRHLISSLQNHNHQL
KGEVLRYKRKLREAQSDLNKTRLRSGSALLQSQSSTEDPKDEPTELKQDSEDLATHSSALKASQEDEVKS
KRDEEERERERREKEREREREREKEKEREREKQKLKESEKERDSVKDKEKGKHDDGRKKEAEIIKQLKIE
LKKAQESQKEMKLLLDMYRSAPKEQRDKVQLMAAEKKSKAELEDLRQRLKDLEDKEKKENKKMADEDALR
KIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKSNQ
IHKLLKEEKEELADQVLTLKTQVDAQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEAAQ
LADDLKAQLELAQKKLHDFQDEIVENSVTKEKDLFNFKRAQEDISRLRRKLETTKKPDNVPKCDEILMEE
IKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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