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Report for CCDS25374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25374.1 Public Mus musculus 11 Smarce1 23 108 98 CCDS HistoryNCBI Gene:57376Re-query CCDS DB by CCDS ID:25374.1Re-query CCDS DB by GeneID:57376See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25374.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103133.3 ENSMUSP00000099422.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103133.3Link to Ensembl Protein Viewer:ENSMUSP00000099422.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103133Re-query CCDS DB by Protein ID:ENSMUSP00000099422
Original member Current member NCBI NM_020618.4 NP_065643.1 Accepted alive Link to Nucleotide Sequence:NM_020618.4Link to Protein Sequence:NP_065643.1Re-query CCDS DB by Nucleotide ID:NM_020618Re-query CCDS DB by Protein ID:NP_065643Link to BLAST:NP_065643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065643.1 411 O54941 411 100% 0 0

Chromosomal Locations for CCDS 25374.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99210069 99210277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99213120 99213330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99214034 99214135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99215114 99215286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99219220 99219391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99219615 99219746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99220655 99220735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99225038 99225142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99228275 99228318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99228497 99228503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGTCAAAAAGACCATCTTATGCCCCACCTCCCACCCCAGCTCCTGCAACACAAATGCCCAGCACACCAG
GGTTTGTGGGATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCAC
CAACAGCCGGGTCACGGCGTCCTCTGGCATTACGATTCCAAAGCCTCCAAAGCCACCAGATAAGCCGCTG
ATGCCCTACATGAGGTACAGCAGAAAGGTCTGGGACCAAGTAAAGGCTTCCAACCCTGACCTAAAGTTGT
GGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCTCACTGATGAAGAGAAGCAAGAATATTTAAA
CGAATACGAAGCAGAAAAGATAGAGTACAATGAGTCTATGAAGGCCTACCATAATTCCCCTGCGTACCTT
GCCTATATTAATGCAAAAAGTCGTGCGGAAGCTGCATTAGAGGAAGAAAGTCGACAGAGACAGTCTCGCA
TGGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAGGATCCAGACGACTATGATGATGGCTTTTC
AATGAAGCACACAGCCACTGCCCGTTTCCAGAGAAACCACCGTCTCATCAGTGAGATCCTCAGTGAGAGT
GTGGTACCTGATGTGCGGTCGGTTGTCACAACAGCTAGAATGCAGGTCCTCAAGCGACAGGTCCAGTCTT
TAATGGTTCATCAGCGGAAACTAGAAGCCGAGCTCCTTCAGATAGAGGAACGACACCAGGAAAAGAAGAG
GAAATTCCTGGAAAGCACGGACTCCTTTAACAATGAACTTAAAAGGTTATGTGGTCTGAAGGTGGAAGTA
GACATGGAGAAGATTGCGGCTGAGATCGCACAGGCGGAGGAACAAGCCCGCAAGAGGCAAGAGGAGAGGG
AGAAGGAGGCAGCAGAGCAGGCTGAGCGCAGTCAGAGCAGCATGGCCCCTGAGGAAGAGCAAGTGGCGAA
CAAAGCCGAGGAGAAGAAAGATGAGGAGAGCATCCCGATGGAGACAGAGGAGACACACCTTGAAGACACA
GCAGAGAGCCAGCAGAATGGTGAAGAAGGCACGTCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGG
TTGACAGCATGGAGGTGGAAGGGACCAGTGACAGTAACACGGGCTCAGAGAGCAACAGCGCCACAGTGGA
GGAGCCGCCCACAGACCCAGTGCCAGAAGACGAGAAGAAGGAGTAA

Translation (411 aa):
MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPL
MPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYL
AYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSES
VVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLCGLKVEV
DMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQSSMAPEEEQVANKAEEKKDEESIPMETEETHLEDT
AESQQNGEEGTSTPEDKESGQEGVDSMEVEGTSDSNTGSESNSATVEEPPTDPVPEDEKKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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