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Report for CCDS16039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16039.1 Public Mus musculus 2 Arl6ip6 23 108 98 CCDS HistoryNCBI Gene:65103Re-query CCDS DB by CCDS ID:16039.1Re-query CCDS DB by GeneID:65103See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028336.6 ENSMUSP00000028336.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028336.6Link to Ensembl Protein Viewer:ENSMUSP00000028336.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028336Re-query CCDS DB by Protein ID:ENSMUSP00000028336
Original member Current member NCBI NM_022989.4 NP_075365.3 Accepted alive Link to Nucleotide Sequence:NM_022989.4Link to Protein Sequence:NP_075365.3Re-query CCDS DB by Nucleotide ID:NM_022989Re-query CCDS DB by Protein ID:NP_075365Link to BLAST:NP_075365.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075365.3 226 Q8BH07 226 100% 0 0

Chromosomal Locations for CCDS 16039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 53192123 53192522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53194284 53194337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53202919 53203051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 53217295 53217388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGTCGTTCGTGGAGAGTTGGAGGTTTGCGGGCGCGCGGAGGCGCCGTCAGGTTACCCCAGGCCCTGCGA
CTCGGCCCGGGTATTCCGACTACACTCAGGGGGACAGCTGGGGTGAGGGCGAAGGCGACGAAGACGAGGG
ATGCGACCAAGTGGCCCGCGACTTGCGGGCAGAGTTCTCAGCCAGGGCGTCGTCGGAGACCAAGAGGGCC
CCGCTACTCCCCCGGGTCGGGGACGGGTCTCCGGTCCTGCCGGATAAGCGCAACGGCATCTTCCCGGCCA
CTGCGGCCAAGCGAACCCAGGCTCGGCGGTGGCCCATCCAAGCCCTTTCCATTCTCTGTTCGCTGCTGTT
CGCCGTCCTCCTTGCTTTCCTTCTCGCCATCGCCTACATGATCGTTAAAGAATTGCATGCAGAAAACTTG
AAAAATGAAGATGATATACATACTGGGCTGTTAGGCTTCTGGTCTCTGCTGATAATATCTCTAACTGCTG
GATTGTCCTGTTGCAGCTTTTCTTGGACAGTGACTTACTTTGATTCATTTGAACCAGGAATGTTTCCACC
CACTCCTCTTTCACCTGCTAGGTTCAAGAAACTGACTGGACATTCTTTCCACATGGGCTACAGCATGGCA
ATTTTGAATGGTATTGTCGCTGCTCTCACTGTGGCATGGTGCCTCATGTAA

Translation (226 aa):
MSFVESWRFAGARRRRQVTPGPATRPGYSDYTQGDSWGEGEGDEDEGCDQVARDLRAEFSARASSETKRA
PLLPRVGDGSPVLPDKRNGIFPATAAKRTQARRWPIQALSILCSLLFAVLLAFLLAIAYMIVKELHAENL
KNEDDIHTGLLGFWSLLIISLTAGLSCCSFSWTVTYFDSFEPGMFPPTPLSPARFKKLTGHSFHMGYSMA
ILNGIVAALTVAWCLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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