NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24676.1 Public Mus musculus 11 Aff4 23 108 98 CCDS HistoryNCBI Gene:93736Re-query CCDS DB by CCDS ID:24676.1Re-query CCDS DB by GeneID:93736See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060945.11 ENSMUSP00000051479.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060945.11Link to Ensembl Protein Viewer:ENSMUSP00000051479.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060945Re-query CCDS DB by Protein ID:ENSMUSP00000051479
Original member Current member NCBI NM_033565.2 NP_291043.1 Accepted alive Link to Nucleotide Sequence:NM_033565.2Link to Protein Sequence:NP_291043.1Re-query CCDS DB by Nucleotide ID:NM_033565Re-query CCDS DB by Protein ID:NP_291043Link to BLAST:NP_291043.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291043.1 1160 Q9ESC8 1160 100% 0 0

Chromosomal Locations for CCDS 24676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 53368664 53368786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53372278 53373057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53375589 53375633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53380586 53380672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53389755 53389791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53392771 53392816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53396539 53396593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53397832 53397869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53398237 53398399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53399589 53400506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53402478 53402566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53404356 53404602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53406581 53406675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53407880 53407943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53408057 53408193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53408399 53408470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53409268 53409361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53410916 53410959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53411836 53412056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 53415388 53415515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3483 nt):
ATGAACCGTGAAGACCGGAATGTGCTGCGCATGAAAGAAAGGGAAAGGCGGAATCAGGAAATTCAGCAGG
GTGAAGACGCCTTCCCACCTAGTTCTCCTCTCTTTGCTGAGCCATACAAAGTCACTAGCAAAGAAGATAA
GTTATCAAGTCGGATTCAGAGCATGCTTGGAAACTACGATGAAATGAAGGATTACATAGGAGACAGATCG
ATACCAAAGCTTGTTGCAATTCCCAAGCCTGCAGTACCAACGACCACAGACGAGAAAGCAAACCCAAATT
TTTTTGAGCAGAGACATGGAGGATCTCATCAGAGTAGCAAATGGACTCCTGTAGGCCCCGCCCCCAGCAC
CTCTCAGTCTCAGAAACGCTCCTCTGCCCTGCAGAGTGGACACAGCAGCCAACGGAGTGGTGCAGGAGGG
AGTGGCGCCAGCAGCAGTGGCCAGAGGCATGACCGTGACTCCTACAGCAGTAGCAGGAAAAAAGGCCAGC
ACGGCTCAGAGCACTCCAAATCTCGATCCTCAAGCCCTGGAAAACCCCAGGCTGTTTCTTCATTAAGTTC
TAGTCATTCCAGGTCTCATGGGAATGATCACCATAGCAAGGAACATCAGCGCTCCAAATCACCTCGGGAC
CCTGATGCCAACTGGGATTCTCCTTCCCGCGGACCTTTTTCAAGTGGGCAACATTCAAGTCAGTCTTTCC
CACCTTCTTTGATGTCAAAATCTAGTTCAATGTTACAGAAACCCACTGCCTATGTACGGCCCATGGATGG
ACAGGAGTCTGTGGAACCAAAGCTGTCCTCTGAGCACTACAGCAGCCAGTCTCATGGTAATAGCATGACT
GAGCTGAAGCCCAGCAGCAAAGCACATCTCACCAAGCTGAAAATTCCTTCCCGACCTTTGGATGCATCGG
TTTCTGGTGATGTAAGCTGTGTAGATGAAATACTTAAAGAGATGACGCATTCATGGCCTCCCCCTCTAAC
GGCTATTCATACACCATGCAAAACAGAACCTTCCAAATTCCCTTTTCCAACTAAGGAGTCGCAACAGTCT
AACTTTGGCCCTGGAGAACAAAAAAGATACAGTACTGCTAAAACATCAAATGGACACCAGTCAAAATCTA
TGTTAAAAGATGACTTAAAACTAAGCAGCAGTGAAGACAGTGATGGGGAACAGGATTGTGATAAGACAAT
GCCAAGGAGTACACCAGGAAGTAACTCTGAACCTTCACACCATAACAGTGAGGGAGCAGACAACTCCAGG
GATGACTCGAGCAGCCACAGTGGATCTGAGAGCAGCTCTGGGTCTGACTCGGAGAGTGAGAGCAGCTCCA
GTGACAGTGAGGCTAATGAGCCGTCGCAGAGCGCATCTCCTGAGCCTGAACCACCACCAACAAACAAGTG
GCAACTTGATAATTGGTTGAATAAAGTGAACCCACATAAAGTATCCCCAGCTTCCTCTGTAGACAGCAAC
ATCCCATCTTCTCAAGCCTACAAGAAAGAAGGCCGGGAGCAGGGCACTGCCAGTAACTACACAGATCCAG
GGGGGACAAAAGAAACGAGCTCTGCCACCCCAGGACGAGACTCTAAAACCATCCAAAAGGGATCAGAAAG
TGGCCGTGGGAGGCAGAAGTCTCCTGCACAGAGCGACAGTACCACTCAGAGGAGAACTGTCGGCAAAAAA
CAACCCAAAAAACCTGAGAAGTCAGCTGCTGAAGAGCCTCGTGGAGGCCTGAAGATAGAAAGTGAGACCC
CTGTGGACATGGCTGCCAGCATGCCCTCCAGCAGGCACAAAGCAGCCACCAAGGGCTCGAGGAAACCCAA
CATCAAAAAGGAATCAAAATCTTCTCCTCGACCTACGGCAGAGAAGAAGAAGTACAAGTCAGCCAGTAAA
CCGTCCCAGAAGTCTCGGGAGATCATAGAGACTGACACCTCGTCCTCAGACTCGGACGGCAGCGAGAGCC
TGCCTCCCTCCTCACAGACTCCTAAGTACCCTGAAAGCAACAGGACTCCTGTCAAACCCTCCTCAGTGGA
GGAAGAAGATAGCTTTTTTCGGCAACGAATGTTCTCTCCTATGGAAGAGAAGGAGCTCCTTTCCCCACTC
AGTGAGCCTGATGACAGGTATCCACTCATTGTGAAGATTGACCTCAATCTTCTGACTCGAATACCCGGGA
AGCCTTACAAAGAAACAGAGCCACCCAAGGGGGAAAAGAAAAATGTTCCAGAGAAACACTCGAGAGAGGT
GCAGAAGCAAGCCTCAGAAAAGGCTTCCAACAAAGGCAAGAGGAAACACAAGAATGATGATGATACCCGA
GCCAGTGAGAGCAAAAAACCCAAAACAGAGGACAAGAACTCATCAGGCCACAAGCCATCCAGCAGCAGAG
AGTCATCTAAGCAGAGTAGTACAAAAGAAAAGGACTTGCTACCTTCACCTGCTGGGCCCATTCTTTCAAA
AGATTCAAAAACAGAGCATGGTTCTCGGAAGAGGACTGTCAGTCAGTCGTCGTCCTTAAAGTCCAGTGGG
ACCAGCAGCAAAGAGAACAGTGGCAGCAGCAGCAAGAGCAGCTCCTCCTCCACAGCGAAGCAGAAGAAGA
CTGAAGGCAAGGGTCCCAGCAGCTCCAAGGAGGCCAAGGAGAAGGCTCCAAATAGCTCCTCTAATTGTCC
TCCGTCTACACCAACTTCTGAGTCTTCGAAGCCTCGGAGAACAAAGCTTGCCTTTGATGACAGAAATTAT
TCAGCAGACCATTATTTACAAGAAGCAAAAAAACTCAAACACAATGCAGATGCTTTGTCTGACAGGTTTG
AGAAAGCCGTGTACTACCTTGATGCTGTAGTGTCTTTCATTGAGTGTGGGAATGCATTAGAGAAGAACGC
TCAGGAATCCAAGTCCCCATTCCCTATGTACTCAGACACGGTGGAGCTCATTAAGTACACTATGAAACTA
AAGAATTATTTGGCACCAGATGCTACAGCTGCAGACAAGAGACTCACAGTACTTTGCCTGAGATGCCAGT
CATTATTGTACCTGAGGCTGTTCAAACTGAAGAAGGAGAACGCTCTCAAGTACTCCAAGACGCTAACTGA
GCACCTGAAGAATTCTTACAGTAATTCTCAAGCACCTTCACCCGGCTTGGGGAGCAAAGCTGTTGGGATG
CCCTCCCCTGTTTCTCCAAAACTGTCACCAGGCAATTCTGGAAGTTACTCTTCTGGGGGAAGTAGTGCTT
CAGCAAGTGGTTCTTCAGTGACCATTCCACAGAAAATCCACCAGATGGCAGCAAGCTATGTCCAGGTTAC
ATCTAACTTCCTCTATGCCACAGAAATTTGGGACCAAGCTGAACAGCTTTCCAAAGAACAAAAAGAATTC
TTTGCTGAACTGGACAAAGTGATGGGCCCTCTCATCTTTAATGCAAGCATCATGACAGATCTGGCTCGTT
ACACCCGGCAGGGACTGCATTGGCTTCGGCAGGATGCCAAGCTGATATCTTGA

Translation (1160 aa):
MNREDRNVLRMKERERRNQEIQQGEDAFPPSSPLFAEPYKVTSKEDKLSSRIQSMLGNYDEMKDYIGDRS
IPKLVAIPKPAVPTTTDEKANPNFFEQRHGGSHQSSKWTPVGPAPSTSQSQKRSSALQSGHSSQRSGAGG
SGASSSGQRHDRDSYSSSRKKGQHGSEHSKSRSSSPGKPQAVSSLSSSHSRSHGNDHHSKEHQRSKSPRD
PDANWDSPSRGPFSSGQHSSQSFPPSLMSKSSSMLQKPTAYVRPMDGQESVEPKLSSEHYSSQSHGNSMT
ELKPSSKAHLTKLKIPSRPLDASVSGDVSCVDEILKEMTHSWPPPLTAIHTPCKTEPSKFPFPTKESQQS
NFGPGEQKRYSTAKTSNGHQSKSMLKDDLKLSSSEDSDGEQDCDKTMPRSTPGSNSEPSHHNSEGADNSR
DDSSSHSGSESSSGSDSESESSSSDSEANEPSQSASPEPEPPPTNKWQLDNWLNKVNPHKVSPASSVDSN
IPSSQAYKKEGREQGTASNYTDPGGTKETSSATPGRDSKTIQKGSESGRGRQKSPAQSDSTTQRRTVGKK
QPKKPEKSAAEEPRGGLKIESETPVDMAASMPSSRHKAATKGSRKPNIKKESKSSPRPTAEKKKYKSASK
PSQKSREIIETDTSSSDSDGSESLPPSSQTPKYPESNRTPVKPSSVEEEDSFFRQRMFSPMEEKELLSPL
SEPDDRYPLIVKIDLNLLTRIPGKPYKETEPPKGEKKNVPEKHSREVQKQASEKASNKGKRKHKNDDDTR
ASESKKPKTEDKNSSGHKPSSSRESSKQSSTKEKDLLPSPAGPILSKDSKTEHGSRKRTVSQSSSLKSSG
TSSKENSGSSSKSSSSSTAKQKKTEGKGPSSSKEAKEKAPNSSSNCPPSTPTSESSKPRRTKLAFDDRNY
SADHYLQEAKKLKHNADALSDRFEKAVYYLDAVVSFIECGNALEKNAQESKSPFPMYSDTVELIKYTMKL
KNYLAPDATAADKRLTVLCLRCQSLLYLRLFKLKKENALKYSKTLTEHLKNSYSNSQAPSPGLGSKAVGM
PSPVSPKLSPGNSGSYSSGGSSASASGSSVTIPQKIHQMAASYVQVTSNFLYATEIWDQAEQLSKEQKEF
FAELDKVMGPLIFNASIMTDLARYTRQGLHWLRQDAKLIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH