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Report for CCDS25842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25842.1 Public Mus musculus 12 Klf11 23 108 98 CCDS HistoryNCBI Gene:194655Re-query CCDS DB by CCDS ID:25842.1Re-query CCDS DB by GeneID:194655See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020982.6 ENSMUSP00000020982.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020982.6Link to Ensembl Protein Viewer:ENSMUSP00000020982.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020982Re-query CCDS DB by Protein ID:ENSMUSP00000020982
Original member Current member NCBI NM_178357.3 NP_848134.1 Accepted alive Link to Nucleotide Sequence:NM_178357.3Link to Protein Sequence:NP_848134.1Re-query CCDS DB by Nucleotide ID:NM_178357Re-query CCDS DB by Protein ID:NP_848134Link to BLAST:NP_848134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848134.1 502 Q8K1S5 502 100% 0 0

Chromosomal Locations for CCDS 25842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 24651525 24651566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24653559 24653810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24654843 24655776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 24660183 24660463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGCACTCGCCGGGCTCCACCGGCCCCGGCGACGGGCGCGCGGCTGACATCATGGACATTTGTGAGTCGA
TCCTGGAGAGGAAGCGGCATGACAGCGAAAGGTCCACATGCAGCGTCCTGGAGCAGACGGACATCGAAGC
TGTGGAAGCTCTTGTCTGCATGAGCTCTTGGGGTCAGAGGTCCCAGATGAGACCCCTCACGCCTGTCTCT
GACTCTGGTGACGTCACCACTGCTGTGCTTATGGACACAGCTGCACCTGATCTACCAAAGGACTTCCATT
CTTTTTCAACTCTGTGTATAACTCCTCCTCAGAGCCCAGAGCTCACGGAGCCGTCAACAGGGACCCCTGT
TCCTTCCCAAGTAGTTAACTCCAAAGGATGCATGGTCACTGCCCTCCCCCCATCCCCTGCTGGGGGCCCC
AGAACACTGAGCAAGAGGGAACCACTGGAGCCAGCCTCAGGGTCCTCCTGCAGGGCTGTGATGACCAGTG
TGATCCGTCACACCGGGGAGAGTCCTGCTCCTACGCGCTTCCCAACTGGCCCCACTCAAGAGCAACGAGC
ATCCGACAGCGGAGAAGGACAGGAGCGTTTGCTGGACCACCTCGAAGCCTTGCAGGACACACGCTTGGCA
AATGGCTTACTCGTCACTAACTTGGTTTCCTGTCAGCCTTGCTTGCACAAGTCCGGTGGTTCGTTCCCCA
CTGACAAAGGTCAACAGACAGGATGGCCCGCTGCTGTTCAGACCTGCTTACCAAAGAATCCTGAAAGTGA
CTTGTCAAGGAAAATCACCCCTCTGATTTCTGTCCCTGTATCCAGTCCCCCTGTCCTTTGCCAGATGATC
CCTGTGGCTGGACAGAATGGCTTGTTCTCAGCCTTTTTGAAACCTCCTACCCAGTTGCCTGCAGGGACTA
TCAAGCCCATCCTACCCCAAGCTGCTTCAATGTCTCAGCCTGTGTTCATGGGCCCACCTGTGCCTCAGGG
AACTGTGATGCTGGTCTTGCCACAGAACACCTTCCCCCAGCCTGCTGCCTGTCCATCCAGTGTCATGGCC
ATTGGAAATACCAAGCTGTTGCCCCTTGCCCCTGCACCAGTGTTCCTTGCCTCCAGCCAGAACTGTGCCC
CTCAGGTAGACTTTTCCCGAAGGAGGAACTATGTTTGCAACTTCCCAGGATGCCGGAAGACCTACTTCAA
AAGTTCCCACCTTAAAGCTCATCTTCGCACTCACACAGGGGAGAAGCCTTTTACCTGCAGCTGGGACGGC
TGTGACAAGAAGTTCGCAAGGTCAGATGAACTGTCTCGCCACCGCAGGACTCACACGGGAGAGAAGAAGT
TTGTGTGTCCTGTGTGTGACCGGCGCTTCATGCGGAGTGACCACCTGACAAAGCACGCTCGTCGCCACAT
GACAACCAAGAAGATCCCAGGCTGGCAGGCAGAGGTGGGCAAGCTGAACAGAATCACTTTGGCAGAGAGC
CCCGGGAGCATCCTCGAACCCTTGCCGGCCTCTGGCTGA

Translation (502 aa):
MHSPGSTGPGDGRAADIMDICESILERKRHDSERSTCSVLEQTDIEAVEALVCMSSWGQRSQMRPLTPVS
DSGDVTTAVLMDTAAPDLPKDFHSFSTLCITPPQSPELTEPSTGTPVPSQVVNSKGCMVTALPPSPAGGP
RTLSKREPLEPASGSSCRAVMTSVIRHTGESPAPTRFPTGPTQEQRASDSGEGQERLLDHLEALQDTRLA
NGLLVTNLVSCQPCLHKSGGSFPTDKGQQTGWPAAVQTCLPKNPESDLSRKITPLISVPVSSPPVLCQMI
PVAGQNGLFSAFLKPPTQLPAGTIKPILPQAASMSQPVFMGPPVPQGTVMLVLPQNTFPQPAACPSSVMA
IGNTKLLPLAPAPVFLASSQNCAPQVDFSRRRNYVCNFPGCRKTYFKSSHLKAHLRTHTGEKPFTCSWDG
CDKKFARSDELSRHRRTHTGEKKFVCPVCDRRFMRSDHLTKHARRHMTTKKIPGWQAEVGKLNRITLAES
PGSILEPLPASG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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