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Report for CCDS27869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27869.1 Public Mus musculus 15 Krt18 23 108 98 CCDS HistoryNCBI Gene:16668Re-query CCDS DB by CCDS ID:27869.1Re-query CCDS DB by GeneID:16668See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27869.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023803.7 ENSMUSP00000023803.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023803.7Link to Ensembl Protein Viewer:ENSMUSP00000023803.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023803Re-query CCDS DB by Protein ID:ENSMUSP00000023803
Original member Current member NCBI NM_010664.2 NP_034794.2 Accepted alive Link to Nucleotide Sequence:NM_010664.2Link to Protein Sequence:NP_034794.2Re-query CCDS DB by Nucleotide ID:NM_010664Re-query CCDS DB by Protein ID:NP_034794Link to BLAST:NP_034794.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034794.2 423 P05784 423 100% 0 0

Chromosomal Locations for CCDS 27869.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102028279 102028674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102029466 102029548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102029823 102029979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102030619 102030783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102030895 102031020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102031296 102031519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102031841 102031961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGAGCTTCACAACTCGCTCCACCACCTTCTCCACCAACTACCGGTCCCTGGGCTCTGTGCGAACTCCCA
GCCAGCGGGTCCGGCCTGCCAGCAGCGCAGCCAGCGTCTATGCAGGTGCTGGGGGCTCCGGGTCCCGGAT
ATCCGTGTCCCGCTCTGTCTGGGGTGGCTCTGTGGGGTCCGCAGGCCTGGCGGGAATGGGTGGAATCCAG
ACCGAGAAGGAGACCATGCAAGACCTGAACGATCGCCTGGCCAGCTACCTAGACAAGGTGAAGAGCCTGG
AAACTGAGAACAGGAGACTGGAGAGCAAAATCCGGGAACATCTGGAGAAGAAGGGGCCCCAGGGCGTCAG
AGACTGGGGCCACTACTTCAAGATCATCGAAGACCTGAGGGCTCAGATCTTTGCGAATTCTGTGGACAAT
GCCCGCATCGTCTTGCAGATCGACAATGCCCGCCTTGCCGCCGATGACTTTAGAGTCAAGTATGAGACAG
AACTAGCCATGCGCCAGTCTGTGGAGAGCGACATCCATGGACTCCGCAAGGTGGTAGATGACACCAACAT
CACAAGGCTGCAGCTGGAGACAGAAATCGAGGCACTCAAGGAAGAACTTCTGTTCATGAAGAAGAATCAT
GAAGAGGAAGTCCAAGGTCTGGAAGCCCAGATTGCCAGCTCTGGATTGACTGTGGAAGTGGATGCCCCCA
AATCTCAGGACCTCAGCAAGATCATGGCGGACATCCGCGCCCAGTATGAAGCGCTGGCTCAGAAGAACCG
CGAGGAACTGGACAAGTACTGGTCTCAGCAGATTGAGGAGAGTACCACAGTTGTCACCACCAAGTCTGCC
GAAATCAGGGACGCTGAGACCACACTCACGGAGCTGAGACGCACCCTCCAGACCTTGGAGATTGACTTGG
ACTCCATGAAAAACCAGAACATCAACTTGGAGAACAGCCTCGGGGATGTGGAGGCCCGATACAAGGCACA
GATGGAGCAGCTCAATGGGGTCCTTCTGCATCTGGAGTCAGAGCTGGCACAAACTCGGGCAGAGGGCCAG
CGCCAGGCCCAGGAATATGAAGCCCTCTTGAACATCAAGGTGAAGCTTGAGGCAGAGATTGCCACCTACC
GCCGCTTGCTGGAGGATGGAGAAGATTTCAGTCTCAACGATGCCCTGGACTCCAGCAACTCCATGCAAAC
TGTGCAGAAGACAACTACCCGTAAGATCGTGGATGGCAGAGTGGTGTCCGAGACTAATGACACCAGAGTT
CTGAGGCACTGA

Translation (423 aa):
MSFTTRSTTFSTNYRSLGSVRTPSQRVRPASSAASVYAGAGGSGSRISVSRSVWGGSVGSAGLAGMGGIQ
TEKETMQDLNDRLASYLDKVKSLETENRRLESKIREHLEKKGPQGVRDWGHYFKIIEDLRAQIFANSVDN
ARIVLQIDNARLAADDFRVKYETELAMRQSVESDIHGLRKVVDDTNITRLQLETEIEALKEELLFMKKNH
EEEVQGLEAQIASSGLTVEVDAPKSQDLSKIMADIRAQYEALAQKNREELDKYWSQQIEESTTVVTTKSA
EIRDAETTLTELRRTLQTLEIDLDSMKNQNINLENSLGDVEARYKAQMEQLNGVLLHLESELAQTRAEGQ
RQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFSLNDALDSSNSMQTVQKTTTRKIVDGRVVSETNDTRV
LRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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