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Report for CCDS49181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49181.1 Public Mus musculus 12 Coa8 23 108 98 CCDS HistoryNCBI Gene:68020Re-query CCDS DB by CCDS ID:49181.1Re-query CCDS DB by GeneID:68020See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163220.9 ENSMUSP00000131169.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163220.9Link to Ensembl Protein Viewer:ENSMUSP00000131169.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163220Re-query CCDS DB by Protein ID:ENSMUSP00000131169
Original member Current member NCBI NM_001163388.1 NP_001156860.1 Accepted alive Link to Nucleotide Sequence:NM_001163388.1Link to Protein Sequence:NP_001156860.1Re-query CCDS DB by Nucleotide ID:NM_001163388Re-query CCDS DB by Protein ID:NP_001156860Link to BLAST:NP_001156860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156860.1 194 Q9CQW7-2 194 100% 0 0

Chromosomal Locations for CCDS 49181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111713293 111713418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111722612 111722809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111724340 111724403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111730022 111730112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111751187 111751275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111754964 111754980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGCGGCTTTGCGGCCCGGAAGCAGAGCGCTTCGCCGGCTTCTCTGCCGGTCCTTCTCCGGCGGCGGCG
GCGTTAGGTTGGCCCGTGAGCGCCCTACGGATCACAGGGATGCGGCGTCCAGCCGGGTCTCAAGATTCTG
CCCTCCAAGACAGTCTTGCCATGATTGGATAGGCCCCCCAGACAAATGCTCAAACCTTCGTCCCGTTCAT
TTTCACATCCCTGAAAACGAGTCTCCCTTGGAGCAAAGACTTAGAGAATTGAGACAAGAAACGCAAGAAT
GGAATCAACAGTTCTGGGCCAAGCAGAACTTGTCCTTCAATAAGGAAAAAGAAGAATTCATTTACTCAAG
ACTACAAGCTAAGGGCGCAGGCTTGCGGACTGAGTCAGGCCAAAGAGCAACGCTGGATGCAGAGGAGATG
GCCGACTTCTATAAGGACTTTCTGAGTAAGAATTTCCAGAAGCACATGCGCTATAACCGGGCTGGGCCTG
GGAGCCAGGATGTTGGATGTGTTGGCAAGTGCTCTTTTGCCGAGCTGCATCCTTACCTCACAGTGTCCGC
CTTACAAGGTTCCTGTCCTGCTTGA

Translation (194 aa):
MAALRPGSRALRRLLCRSFSGGGGVRLARERPTDHRDAASSRVSRFCPPRQSCHDWIGPPDKCSNLRPVH
FHIPENESPLEQRLRELRQETQEWNQQFWAKQNLSFNKEKEEFIYSRLQAKGAGLRTESGQRATLDAEEM
ADFYKDFLSKNFQKHMRYNRAGPGSQDVGCVGKCSFAELHPYLTVSALQGSCPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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