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Report for CCDS89017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89017.1 Public Mus musculus 17 Ptx4 23 108 98 CCDS HistoryNCBI Gene:68509Re-query CCDS DB by CCDS ID:89017.1Re-query CCDS DB by GeneID:68509See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000232902.1 ENSMUSP00000156495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232902.1Link to Ensembl Protein Viewer:ENSMUSP00000156495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232902Re-query CCDS DB by Protein ID:ENSMUSP00000156495
Original member Current member NCBI NM_001163416.1 NP_001156888.1 Accepted alive Link to Nucleotide Sequence:NM_001163416.1Link to Protein Sequence:NP_001156888.1Re-query CCDS DB by Nucleotide ID:NM_001163416Re-query CCDS DB by Protein ID:NP_001156888Link to BLAST:NP_001156888.1

Chromosomal Locations for CCDS 89017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25120851 25120991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25122784 25123348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25124574 25125226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGAGGTGCTTGAAGAAGAAGACCCTGCTTTTTCTCCTCATTTTTGTGTCCCTGAATGTACACAGGACTC
CGTCACAGGAAGCTCACCCAGCCAGGCAAAGAAAGCCATTTTTTGAGAGGCTCCGTCGACTAGAAGAGCA
GAGCCTGGTGGAACAGAGCCAAGCCGTAGCTCTAGCGATGAATCAGTCTCAAGCTGCCATACAAGGAGAT
GTGGCCCATTTAAAGACCTGGTATAGGAAGAGCCAGCGAAGGAGCCAGAAGGTAGATGCCCGACTTCAAG
CCTTGGACCTCTCCCTGAGCACAAAGAGCAGGCAGTGGGTAGAGAAGGAAGGGGAGCAAAAGGCACAGAG
GGAGGCTATTGCAAGCCTGGCCCTAAGCGTTCAGGCACTACAGGATGCACTGGCCAGCCTTACACAGCAA
GTCCACAGCCAGGGTGCCAGGCTTGCTGCTCTGGAGGGACAGACACAGAGGGCCTCCTCTGGTACTGTGG
CCCTGGGGTTGACCACAGCCCCCAACCCCACCCAGCTTGCTCAGCGAGGCCCAGGATCCTTGCAACTGTG
GAGGGACCGCCAGGTAGCCAAGTCTTCACCCCAACACAGGAGTTCCCCTCATGACGTCACTGTCCACGTT
CAGGAGATGCAGAAGTTCCAAACCCCAAGCAGTCATCAAGCAGCCCCACCAAGGACCTACCAAGGACCAG
GAAACATTTGCAACACGGACCCAGTGCTGATTTTCCCCAACACCTCCACCGAAAATGTGATCTTCCTTAG
CCCTGGCTTCCTCATGCCCCTACGAGCCCTGTCCTTCTGCAGTTGGGTCCGAATGGCCACCAGCCACCTG
GGCACCCTCCTTTCCTATGCCACCAAAGACAATGACAACAAGTTAGTACTGCATGGCCGAAACTCCCTGG
TCCCTGGTTCCATCCACTTTGTGATTGGGGACCCAGACTTCAGGGAACTGTCCCTGAAACCACTCCTGGA
TGGCCAGTGGCACCACATTTGTATCATCTGGACATCCGTGGAGGGCAAGTACTGGCTCCACATAGACCGA
AGGTTAGTAGCCACCGGCTCCCGCTTCAGAGAGGGCTATGAGATCCCTCCCGGAGGGTCGCTTGTGCTGG
GCCAGGAACAAGACACTGTGGGGGGCGAGTTTGACAGCTCTGAGGCCTTCGTAGGGAGCATATCTGGCTT
GGCCATCTGGGACCGGGCACTGCTCCCTAGAGAAGTTGCAAACTTGGCCTCTGGAAAAGAGCTCCCAACA
GGCGCTATTCTGACGCTGACCAATGTCACTTCTGTGGGTGGATTTGTGCAGAGAGCCAAATGTACCTGCC
TGGAGCAGTGTCCATATGCCACACCGTGA

Translation (452 aa):
MRCLKKKTLLFLLIFVSLNVHRTPSQEAHPARQRKPFFERLRRLEEQSLVEQSQAVALAMNQSQAAIQGD
VAHLKTWYRKSQRRSQKVDARLQALDLSLSTKSRQWVEKEGEQKAQREAIASLALSVQALQDALASLTQQ
VHSQGARLAALEGQTQRASSGTVALGLTTAPNPTQLAQRGPGSLQLWRDRQVAKSSPQHRSSPHDVTVHV
QEMQKFQTPSSHQAAPPRTYQGPGNICNTDPVLIFPNTSTENVIFLSPGFLMPLRALSFCSWVRMATSHL
GTLLSYATKDNDNKLVLHGRNSLVPGSIHFVIGDPDFRELSLKPLLDGQWHHICIIWTSVEGKYWLHIDR
RLVATGSRFREGYEIPPGGSLVLGQEQDTVGGEFDSSEAFVGSISGLAIWDRALLPREVANLASGKELPT
GAILTLTNVTSVGGFVQRAKCTCLEQCPYATP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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