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Report for CCDS49318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49318.1 Public Mus musculus 13 Arb2a 23 108 98 CCDS HistoryNCBI Gene:68675Re-query CCDS DB by CCDS ID:49318.1Re-query CCDS DB by GeneID:68675See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091459.11 ENSMUSP00000089038.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091459.11Link to Ensembl Protein Viewer:ENSMUSP00000089038.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091459Re-query CCDS DB by Protein ID:ENSMUSP00000089038
Original member Current member NCBI NM_001163419.1 NP_001156891.1 Accepted alive Link to Nucleotide Sequence:NM_001163419.1Link to Protein Sequence:NP_001156891.1Re-query CCDS DB by Nucleotide ID:NM_001163419Re-query CCDS DB by Protein ID:NP_001156891Link to BLAST:NP_001156891.1

Chromosomal Locations for CCDS 49318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77759460 77759529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77761838 77761938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77825323 77825388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77834510 77834701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77902654 77902875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77951985 77952104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77999586 77999702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78006388 78006472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 78163513 78163655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGAAAAAGGACGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAATGAAA
AGGGGCAGTTAAGACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGAGAAGACTTACACAGGTG
GAACCAGAAAAGATATGAAGCTCTGGGCGAGATCATCACAAGATATGTTTATGAGCTCCTGGAAAGTGAC
TGTAATTTGAAAAAAATCTCTATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGA
GTGAGGATGCTTTGACAAATCCACAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGG
TCAGTGGGCTAGAAGGCTTATTATTAATGAAGATCTGGACAGTGGCACACAGATACCTTTTATTAAGAGA
GCTATGGATGAAGGGTATGGAGTCATCGTCCTGAACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGA
AAATGCATAAACAGTCATCATCTTCTGATGGTACAGATGAGCCAGCAGGGAAGCGGGAAAGGAGAGATAA
GGTCTCCAAGGAAACAAAGAAGCGTCGTGATTTCTATGAGAAGTACCGCAACCCTCAAAAGGAGAAAGAA
ATGATGCAGTTGTTTATCAGGGAAAATGGTTCTCCTGAAGAGCATGCGGTCTATGTGTGGGACCATTTCA
TAGCCCAGGCTGCTGCTGAGAATGTGTTCTTTGTGGCTCATAGCTATGGAGGACTTGCTTTTGTTGAACT
GATGATTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATTGACAGACTCTGTTCACAAT
GTGTGGCATCAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGAACTGTTGTAACTGGGTCTCCA
GCTCAGAACCATTAGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGAGTGTCTGCAGGCACCGA
CCGTCACGAGCTCACTTCCTGGAAGAGCTTCCCGTCTATCTTCAAGTTCTTCGCGGAAGCCTCGGAGGCC
AAGAGCAGCTCGCAGAAGCCGGCCCTGACGCGGCGCTCGCACCGGATCAAGCACGAGGAGCTGTGA

Translation (371 aa):
MKKDEPPFDFPDTLEGFEYAFNEKGQLRHIKTGEPFVFNYREDLHRWNQKRYEALGEIITRYVYELLESD
CNLKKISIPVDATESEPKSFIFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQIPFIKR
AMDEGYGVIVLNPNENYIEVEKQKMHKQSSSSDGTDEPAGKRERRDKVSKETKKRRDFYEKYRNPQKEKE
MMQLFIRENGSPEEHAVYVWDHFIAQAAAENVFFVAHSYGGLAFVELMIQREADVKSKVTAVALTDSVHN
VWHQEAGKTIREWMRENCCNWVSSSEPLDTSVESMLPDCPRVSAGTDRHELTSWKSFPSIFKFFAEASEA
KSSSQKPALTRRSHRIKHEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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