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Report for CCDS48928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48928.1 Public Mus musculus 11 Krt33b 23 108 98 CCDS HistoryNCBI Gene:16671Re-query CCDS DB by CCDS ID:48928.1Re-query CCDS DB by GeneID:16671See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073890.3 ENSMUSP00000073552.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073890.3Link to Ensembl Protein Viewer:ENSMUSP00000073552.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000073890Re-query CCDS DB by Protein ID:ENSMUSP00000073552
Original member Current member NCBI NM_013570.1 NP_038598.1 Accepted alive Link to Nucleotide Sequence:NM_013570.1Link to Protein Sequence:NP_038598.1Re-query CCDS DB by Nucleotide ID:NM_013570Re-query CCDS DB by Protein ID:NP_038598Link to BLAST:NP_038598.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038598.1 404 Q61897 404 100% 0 0

Chromosomal Locations for CCDS 48928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100023957 100024074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100024822 100025042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100025260 100025385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100025480 100025641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100026437 100026593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100027473 100027555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100029478 100029825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGCCATACAACTGCTGCCTGCCCGCCATGAGCTGCCGCACCAGCTGCTCTTCCCGGCCCTGCGTGCCCC
CCAGCTGCCATGGCTGCACCCTGCCCGGGGCCTGCAACATCCCCGCCAATGTGGGCAACTGCAATTGGTT
CTGTGAGGGCTCCTTCAATGGCAATGAGAGGGAGACCATGCAGTTCCTGAATGACCGCCTGGCCTCCTAT
ATGGAGAAGGTGAGGCAGCTGGAGAGAGAGAATGCAGAGCTGGAATGTAAGATCCAAGAGAGGAACCAGC
AGCAGGACCCCCTGGTGTGTCCTGCCTACCAGGCCTACTTCAGGACCATTGAGGAGCTGCAGCAGAAGAT
TCTCTGTGGCAAGTCTGAGAACGGCAGGCTGGTGGTGCAGATCGACAATGCCAAGCTGGCTGCTGATGAC
TTCAGGACCAAGTATGAGTCAGAGCTGTCCCTGCGGCAGCTGGTGGAGTCAGACCTCAATGGCCTGCGCA
GGATCCTGGACGAACTGACCCTCTGCAAGTCTGATCTGGAGGCACAGGTGGAGTCCCTGAGGCAGGAGCT
GCTGTGTCTCAAGCAAAACCATGAGGAGGAAGTCAACACCCTGCGCTGCCAGCTTGGAGACCGCCTCAAC
GTAGAGGTGGACGCTGCTCCCACCGTGGACCTGAACCGAGTGCTCAACGAGACCAGGTGTCAGTACGAGG
CCCTGGTGGAAACCAACCGCCGGGAAGTGGAGGAATGGTTCACCACACAGACAGAGGAGCTGAACAAGCA
GGTGGTGTCTAGCTCAGAGCAGCTGCAGTCCTGCCAGGCAGAGATCATCGAGCTGAGACGCACAGTCAAT
GCCCTGGAGATCGAGCTGCAGGCCCAGCACAGCATGAGAAACTCTCTGGAGAATACCCTGGCAGAGAGTG
AGGCTCGCTACAGCTCTCAGCTGTCCCAGGTGCAGTGCCTGATCACCAACGTGGAGTCCCAGCTTGGTGA
GATCCGGGCTGACCTGGAGCGTCAGAACCAGGAGTACCAGGTGTTGCTGGATGTCAAGGCCCGGCTGGAG
TGTGAGATCAACACGTATAGGGGCCTGCTGGAGAGCGAGGACTGCAAGCTGCCCTGCAACCCCTGTGCCA
CCACCAATGCCTGTGACAAGCCCATTGGACCCTGTGTCACAAACCCTTGTGTCACACGCTCCCGATGTGG
ACCCTGCAATTCCTTTGGCTGCTAA

Translation (404 aa):
MPYNCCLPAMSCRTSCSSRPCVPPSCHGCTLPGACNIPANVGNCNWFCEGSFNGNERETMQFLNDRLASY
MEKVRQLERENAELECKIQERNQQQDPLVCPAYQAYFRTIEELQQKILCGKSENGRLVVQIDNAKLAADD
FRTKYESELSLRQLVESDLNGLRRILDELTLCKSDLEAQVESLRQELLCLKQNHEEEVNTLRCQLGDRLN
VEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWFTTQTEELNKQVVSSSEQLQSCQAEIIELRRTVN
ALEIELQAQHSMRNSLENTLAESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVKARLE
CEINTYRGLLESEDCKLPCNPCATTNACDKPIGPCVTNPCVTRSRCGPCNSFGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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