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Report for CCDS50190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50190.1 Public Mus musculus 17 Thumpd2 23 108 98 CCDS HistoryNCBI Gene:72167Re-query CCDS DB by CCDS ID:50190.1Re-query CCDS DB by GeneID:72167See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025093.5 ENSMUSP00000025093.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025093.5Link to Ensembl Protein Viewer:ENSMUSP00000025093.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025093Re-query CCDS DB by Protein ID:ENSMUSP00000025093
Original member Current member NCBI NM_028138.1 NP_082414.1 Accepted alive Link to Nucleotide Sequence:NM_028138.1Link to Protein Sequence:NP_082414.1Re-query CCDS DB by Nucleotide ID:NM_028138Re-query CCDS DB by Protein ID:NP_082414Link to BLAST:NP_082414.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082414.1 528 Q9CZB3 528 100% 0 0

Chromosomal Locations for CCDS 50190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 81026571 81026970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81032632 81032740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81037498 81037612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81038105 81038176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81044100 81044187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81049937 81049989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81052895 81052972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81054124 81054533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81055775 81055910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 81064935 81065060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCTGTAGCCCAGGCAGACCCGGGTTCTGACCCCGCTGGCGGCGCCCGGTTCTTCTGCACCGCGGGCC
GCGGCCTGGAGCCGTTCTTGATGCGGGAGGTGCGCGCGCGGCTGGAAGCCACGCAGGTTGAATACATTTC
AGGAAAAGTGTTTTTCACCACCTGTTCAGATTTGCCCTCTATGAAGAAGTTGAAGTCAGCGGAAAGACTG
TTTGTGTTGATTAAGAAGCAGCTTCCCATTGCAGTCTCTTCTCTGCACAAAGGAAAAATACTTAATGAGA
TGCAAAGATTTGTAAATGATGATCCAGGAAGTTGGCTGGAGGCCATTTCACTTTGGAAAAAACTTCTCGA
ACATGACCCAAAAAGAGAAAAAGTTTCTCAAAGGGATGCTAACCCACTAAAACGGAAAGCGGGAGAAAAT
GAAACTATCATTGCTAAGAAATTAAAAGTGGAGGAGAAACAAGAGGTTGCCAAGGATCACGGAGAAAGCC
AGGAGGACAAACTTCTGCAAGGCTCCCCGGAGCAAGGAGAAGCTGTCACTAGAACAGAGCTGCAAGACCA
TAGACTCAATAGTACCACAGAGAAGGCAGCTGATGCTCAGGACCAGGAGGACTTGACCTTCAGGGTTTCC
TGCCGCTGCACCGGGAATGTCAGAAAGGTCATCACGGGACAGGAGGCAGGAAGAGTGATTGGACTTGCTC
TCATGAGGCAGTTTGGATGGAAAGCTGACTTGAGGAATCCAAATATAGAGATCTTCATGCACCTGAGTGA
TGCTTACTCCGTGGTGGGGATTCCTCTGCTCAGAATGCCCTTGGCCAGCAGAACTTACATCCAGACAGCT
GGGCTGCGGTCAACCATAGCGTGGGCCATGGCGTCCATTGCAGAAATTAAGGCTGGAGCACTGGTTTTAG
ATCCGATGTGTGGCCTTGGGACTATACTTGTGGAAGCAGCCGAAGAGTGGCCAGATGTATTTTACATGGG
TGCTGATATGAGTGACGCACAGTTACTTGGCGCATGTGACAATCTGAAGGCTGCAGGCCTTACAGACAGG
ATTGAGTTACTTAAAAGCTCTGTTACAGATTTACCACTGCCATCACAAAGTACGGATGTTATTATTTCTG
ACATTCCATTTGGGAAAAAATTTAAGTTAGGAAAAGACATCAAAAGCATTCTACAAGAAATGGAAAGAGT
GCTGCGTGTTGGTGGGGCCATGGTCTTGTTGCTCAGTGAAGATCACCACCGGCATCTTACAGACTGTGGA
GGCAGCAGCATCCCCCTGACTTCCAAGGGTCACATCGCTGAGCCTGAGATGAAGACGCTTTCGAATCCTG
ACAGAACTGGTGCACCCGACACAGCATCACCTTCACAAAGAGCAAGTAGCGTGCAGTGTCTGGGCAGGAT
GCGGCCCTGTGGCTCATTGGTACCAGTGGAATCCTTCAAAGTTAGCCTTGGAAAAACAGATGCATTTATA
TGTAAGTATAAGAAGGCACAAGCTTCGGGACTGTCCTCAGCTGAATGCCATGAGCCAGGTGCACACACCG
AGATGGCAGCCATGCAAGAATCCCCTTCTCTCCAGGATTCCTTATAG

Translation (528 aa):
MAVAQADPGSDPAGGARFFCTAGRGLEPFLMREVRARLEATQVEYISGKVFFTTCSDLPSMKKLKSAERL
FVLIKKQLPIAVSSLHKGKILNEMQRFVNDDPGSWLEAISLWKKLLEHDPKREKVSQRDANPLKRKAGEN
ETIIAKKLKVEEKQEVAKDHGESQEDKLLQGSPEQGEAVTRTELQDHRLNSTTEKAADAQDQEDLTFRVS
CRCTGNVRKVITGQEAGRVIGLALMRQFGWKADLRNPNIEIFMHLSDAYSVVGIPLLRMPLASRTYIQTA
GLRSTIAWAMASIAEIKAGALVLDPMCGLGTILVEAAEEWPDVFYMGADMSDAQLLGACDNLKAAGLTDR
IELLKSSVTDLPLPSQSTDVIISDIPFGKKFKLGKDIKSILQEMERVLRVGGAMVLLLSEDHHRHLTDCG
GSSIPLTSKGHIAEPEMKTLSNPDRTGAPDTASPSQRASSVQCLGRMRPCGSLVPVESFKVSLGKTDAFI
CKYKKAQASGLSSAECHEPGAHTEMAAMQESPSLQDSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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