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Report for CCDS17511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17511.1 Public Mus musculus 3 Pmvk 23 108 98 CCDS HistoryNCBI Gene:68603Re-query CCDS DB by CCDS ID:17511.1Re-query CCDS DB by GeneID:68603See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029564.11 ENSMUSP00000029564.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029564.11Link to Ensembl Protein Viewer:ENSMUSP00000029564.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029564Re-query CCDS DB by Protein ID:ENSMUSP00000029564
Original member Current member NCBI NM_026784.3 NP_081060.2 Accepted alive Link to Nucleotide Sequence:NM_026784.3Link to Protein Sequence:NP_081060.2Re-query CCDS DB by Nucleotide ID:NM_026784Re-query CCDS DB by Protein ID:NP_081060Link to BLAST:NP_081060.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081060.2 192 Q9D1G2-1 192 100% 0 0

Chromosomal Locations for CCDS 17511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89459370 89459464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89461882 89461945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89464296 89464448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89467547 89467676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89468514 89468650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGCCCCGCTCGGAGCCTCCCCGCGTCTGGTGCTGCTGTTTAGCGGGAAGAGAAAATCCGGGAAGGACT
TCGTGACCGAGAGGCTGAAGAGCAGACTTGGAGGTAACATCTGTGCTCTCCTGCGGCTCTCTGGTCCACT
CAAGGAGGAGTATGCTCGGGAGCATGGCTTGGACTTCCAGAGACTTCTGGATGCGAGCACCTACAAGGAG
ACCTATCGGAGGGACATGATCTGTTGGGGGGAGCAGAAGCGCCAGGCAGACCCAGGCTTCTTCTGCCGGA
AGATTGTGGAAGGCGTGTCCCAGCCTATCTGGCTGGTGAGTGACACACGGAGGACATCTGACATCCAGTG
GTTTCAGGAGGCCTATGGGGCTGTGATACAGACAGTCCGAGTAGTGGCCTCGGAGCAGAGTCGACAGCAA
CGGGGCTGGGTGTTCACACCAGGGGTGGACGATGCTGAGTCAGAGTGTGGTCTGGACAACTTTGGGAACT
TTGACTGGGTCATTGAGAACCACGGAGATGAGCAGTGCCTGGAGGATCAGCTGGAGCACCTGCTGGGATT
TATTCAAGCCAAACTTTAG

Translation (192 aa):
MAPLGASPRLVLLFSGKRKSGKDFVTERLKSRLGGNICALLRLSGPLKEEYAREHGLDFQRLLDASTYKE
TYRRDMICWGEQKRQADPGFFCRKIVEGVSQPIWLVSDTRRTSDIQWFQEAYGAVIQTVRVVASEQSRQQ
RGWVFTPGVDDAESECGLDNFGNFDWVIENHGDEQCLEDQLEHLLGFIQAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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