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Report for CCDS50187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50187.1 Public Mus musculus 17 Ttc39d 23 108 98 CCDS HistoryNCBI Gene:67737Re-query CCDS DB by CCDS ID:50187.1Re-query CCDS DB by GeneID:67737See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053168.3 ENSMUSP00000053781.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053168.3Link to Ensembl Protein Viewer:ENSMUSP00000053781.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053168Re-query CCDS DB by Protein ID:ENSMUSP00000053781
Original member Current member EBI ENSMUST00000134652.1 ENSMUSP00000123158.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134652.1Link to Ensembl Protein Viewer:ENSMUSP00000123158.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134652Re-query CCDS DB by Protein ID:ENSMUSP00000123158
Original member Current member NCBI NM_026351.2 NP_080627.2 Accepted alive Link to Nucleotide Sequence:NM_026351.2Link to Protein Sequence:NP_080627.2Re-query CCDS DB by Nucleotide ID:NM_026351Re-query CCDS DB by Protein ID:NP_080627Link to BLAST:NP_080627.2

Chromosomal Locations for CCDS 50187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 80215914 80217728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGTCACGGTTCCAAAGACACGAGGACAATGACGAGTACCTGTTAAGTACCTTTAGTCTGAGTGAAGGCG
AGCATGATAGAATGGTGAGAGTAACTAGATCCCACAATCTAAAAGACAGTGAAGCAGAGGACAAGTTCGA
GGATGCCCATGAAATTATCCCTGTGGCAACAACAATGAGCCTTTTATCATCCTTGGAAGAATGCACAACT
GGATTGTATTTGTTTCTAAATAACAGGTTCTCAGACGCCATCAACCTTATTCACCCATGGTCAAAAAACA
GTTCATACCACGCCCTGATATACAGTATGTTTATGGTTGTCAAGGCCATCCTCACCTTTGAGCCACAGGA
TATCCAGATCGGAATGAACGCCGCAAAGGAAGCTTTGAAAACCTGCAACAATTTCCGAAAAAAGCCCAGG
ATAGTGACTTTATCTCGCCTAATGAGTAGACAGGGAATAAAGTCTATCAAAGAGGAGGAATTACATGCAG
AAGTCTGTTATGCTGAGTGTCTAGTCTTGAAGTCTGCTATAACATTTATACAGGACGACAGTTTGCTGAG
TTTCCTCAAAAGCGGTGTCAATGTTGGGTCAAGCTATCAAATATACAAAGACTGCCAACAGGTCTTAGAA
CTTATGCCTGAGAACCAAAGTAAAACCCACAGACACTTGATTGGAGGGATAAAATTTGGAGTTGGGGTAT
TCAATCTGATGTTTTCACTTGTACCACCCAAATCACTGAAACTTCTCAATATGGTTGGCTATTCTGGAGA
CAGAGAAGTGGGCCTGGCCTTGCTCCACGACAGTGCATCTGAACCGCATATAAACAACATCTTAAGTGTG
TTCACTCTTCTCTTCTACTACAACTATGTGCGTGTAGTTGTTGGTGTTGAAAAGGCTTCTACTGCTGCCA
CCGAGAGTCTCTTCCTGATCTACCTGGAGAAATTCCCCAACTGTGTTGTACTTAAATTTTTCCGTGCACG
TTTTAACATGCTAAACGGTAATTTTGAAAGCGCAAAGTTAAAGTTACAAGAGTGCATCATTACTCAGAAC
GAGTGGAAGCAGGTCCATCACCTCTGTTACTGGGAGCTCATGTGGTGCCATATTTTCTTGCAGAATTGGA
AGCAGGCCTACAACTATGCCAGCCTATTGTTTCAGCATAGCAGATGGTCTAAGGCCATCTATATATACAG
CAAGGCTATCATACTGGCCTTGATTCCTCCTGACTGTGTGGACTCGGAAAACGAGAGCCTGAGCTCTTAC
TTCTTACGCGTGGATAGCTTGAGAATCAAAATTTTAGGCTCTTCTGTGCCCATAGAAAAGTTTATTGCTG
AGAAAAGTCAGCGCTATGGTACTACGACAGGCTGGTTTACAGCACAGCCCCTTCTGGAGTTCATCTACGC
CTGGAGTGGCTTCCGAGTCATGAGCAAGAAAATAGAGCTTATTTCAAGTTGGCTATTGATAATTGACAAA
GGCAAAGAGCTTTTGAGTGAAAACCCAAACGAGGAGTACGGCATAGATGACATGAGCTTGTTAAATCTGC
TGAAAGGCCTGTGCCTGAAGCACTTGGGCAAGCACCTGAAGGCTGAGCACTACTTTATTCGTGTTATCAG
GAAGGAGAAAATGTTAAAGTACGACCACTATTTGGTGCCATATAGTTACTATGAACTGGGAATGCTACAC
TATCTAAAAGGAGACTATGCCAATGCAATGAAAAACCTCGACAACATAAAGAACTATAAAGACTATTCCA
TGGAAGCCCGGCTACAGTTTAGGGCTCATATTGCCCTTGAACAAATAGCTAAATTAGAAAAGTGA

Translation (604 aa):
MSRFQRHEDNDEYLLSTFSLSEGEHDRMVRVTRSHNLKDSEAEDKFEDAHEIIPVATTMSLLSSLEECTT
GLYLFLNNRFSDAINLIHPWSKNSSYHALIYSMFMVVKAILTFEPQDIQIGMNAAKEALKTCNNFRKKPR
IVTLSRLMSRQGIKSIKEEELHAEVCYAECLVLKSAITFIQDDSLLSFLKSGVNVGSSYQIYKDCQQVLE
LMPENQSKTHRHLIGGIKFGVGVFNLMFSLVPPKSLKLLNMVGYSGDREVGLALLHDSASEPHINNILSV
FTLLFYYNYVRVVVGVEKASTAATESLFLIYLEKFPNCVVLKFFRARFNMLNGNFESAKLKLQECIITQN
EWKQVHHLCYWELMWCHIFLQNWKQAYNYASLLFQHSRWSKAIYIYSKAIILALIPPDCVDSENESLSSY
FLRVDSLRIKILGSSVPIEKFIAEKSQRYGTTTGWFTAQPLLEFIYAWSGFRVMSKKIELISSWLLIIDK
GKELLSENPNEEYGIDDMSLLNLLKGLCLKHLGKHLKAEHYFIRVIRKEKMLKYDHYLVPYSYYELGMLH
YLKGDYANAMKNLDNIKNYKDYSMEARLQFRAHIALEQIAKLEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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