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Report for CCDS19845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19845.1 Public Mus musculus 5 Cyth3 23 108 98 CCDS HistoryNCBI Gene:19159Re-query CCDS DB by CCDS ID:19845.1Re-query CCDS DB by GeneID:19159See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116456.9 ENSMUSP00000112157.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116456.9Link to Ensembl Protein Viewer:ENSMUSP00000112157.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000116456Re-query CCDS DB by Protein ID:ENSMUSP00000112157
Original member Current member NCBI NM_011182.4 NP_035312.3 Accepted alive Link to Nucleotide Sequence:NM_011182.4Link to Protein Sequence:NP_035312.3Re-query CCDS DB by Nucleotide ID:NM_011182Re-query CCDS DB by Protein ID:NP_035312Link to BLAST:NP_035312.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035312.3 399 O08967 399 100% 0 0

Chromosomal Locations for CCDS 19845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143622640 143622673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143684396 143684478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143686473 143686537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143686978 143687044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143692548 143692666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143697716 143697796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143701319 143701431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143701597 143701745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143702814 143702925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143707084 143707160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143707239 143707310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143707395 143707549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143707833 143707905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGACGAAGGCGGTGGCGGTGAGGGCGGCAGCGTGCCTGAAGACCTGTCATTAGAAGAGCGAGAAGAAC
TTTTGGACATTCGTAGAAGAAAAAAGGAACTTATTGATGACATTGAGAGGCTGAAATATGAAATTGCAGA
AGTGATGACGGAGATTGACAACCTGACTTCAGTGGAGGAGAGCAAAACTACTCAGAGGAACAAGCAAATA
GCCATGGGAAGGAAGAAATTCAACATGGACCCCAAAAAGGGCATTCAGTTCCTAATTGAGAACGACCTGC
TGCAGAGCTCCCCAGAGGATGTCGCCCAGTTTCTGTACAAAGGAGAGGGCCTGAACAAGACCGTCATCGG
AGACTACCTGGGTGAGAGGGATGACTTTAATATCAAAGTTCTTCAGGCTTTTGTTGAGCTGCATGAGTTT
GCTGATCTCAACCTTGTCCAGGCCTTAAGGCAGTTCCTATGGAGCTTCAGACTTCCTGGAGAGGCACAGA
AGATCGACCGCATGATGGAGGCCTTTGCATCCCGATACTGCCTGTGCAACCCTGGGGTCTTCCAGTCCAC
AGATACATGCTACGTGCTCTCCTTTGCCATCATCATGCTCAACACCAGCTTGCACAACCACAACGTGCGC
GACAAGCCCACCGCTGAGCGCTTCATCACCATGAACCGAGGCATCAACGAGGGTGGGGACCTTCCTGAGG
AGCTGCTGAGGAACTTGTATGAAAGTATCAAGAATGAGCCGTTTAAGATCCCAGAAGACGACGGAAATGA
CCTGACACACACGTTCTTCAACCCAGACCGAGAAGGCTGGCTGCTGAAGCTGGGGGGTCGTGTGAAGACC
TGGAAACGGCGCTGGTTCATCCTCACAGATAACTGCCTCTACTACTTTGAGTACACCACGGACAAGGAGC
CCAGGGGCATCATCCCCCTGGAGAACCTCAGCATCAGGGAGGTGGAGGACCCCCGGAAGCCGAACTGCTT
TGAGCTGTATAACCCCAGTCACAAAGGTCAAGTCATCAAGGCCTGCAAGACGGAGGCCGATGGCCGTGTG
GTGGAGGGCAACCACGTTGTGTACCGGATCTCTGCCCCCAGCCCGGAGGAAAAGGAGGAGTGGATGAAGT
CCATCAAAGCAAGCATCAGTAGGGACCCGTTCTATGACATGTTGGCCACGAGGAAAAGGAGGATTGCCAA
TAAGAAATAG

Translation (399 aa):
MDEGGGGEGGSVPEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQI
AMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEF
ADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVR
DKPTAERFITMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKT
WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRV
VEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFYDMLATRKRRIANKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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