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Report for CCDS50140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50140.1 Public Mus musculus 17 Treml4 23 108 98 CCDS HistoryNCBI Gene:224840Re-query CCDS DB by CCDS ID:50140.1Re-query CCDS DB by GeneID:224840See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136272.7 ENSMUSP00000120550.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136272.7Link to Ensembl Protein Viewer:ENSMUSP00000120550.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136272Re-query CCDS DB by Protein ID:ENSMUSP00000120550
Original member Current member NCBI NM_001163796.1 NP_001157268.1 Accepted alive Link to Nucleotide Sequence:NM_001163796.1Link to Protein Sequence:NP_001157268.1Re-query CCDS DB by Nucleotide ID:NM_001163796Re-query CCDS DB by Protein ID:NP_001157268Link to BLAST:NP_001157268.1

Chromosomal Locations for CCDS 50140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48264380 48264440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48264632 48264985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48269386 48269436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48269709 48269766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48272689 48272818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48274380 48274493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGGCCTGGAGGTACTCACAACTGCTCCTGGTCCCTGTGCAGCTGGTGTTCCTGGCCTCAGTTTGTTGTC
CAGGTGTCTGGGGGTCCACAGTATCTGAAGAGCTTCATAGAATGGTAGGACAGAGCCTCTCCGTGCAGTG
CCAATACAAGCCTAAGGAGGAGTCCTATGTGCTGAAAACGTGGTGTCGGCAAACAGCCCCAAGTAAATGT
ACGAGAGTGGTCACTACCTCTGAGCCTCGGAAAGCAGCCAGGGAATTACAGCACACAATCTGGGATGATC
CTGAAGCTGGCTTCTTCAACATCACCATGACTCAACTAACAGAGGATGACTCAGCGTTCTACTGGTGTGG
TCCATATTATCCTTCCCTCAGAGAAGTAACTGTTCTCAGAAACATCAGCCTGGTGGTGTCGCCAGCCCCA
TCAACCCTTCCTTCGCAGACGATTGCTCCGCTCCCAGAAAGCACAGTTCTGACTACCTCTCCCGAGGAGA
CCACTGACTCTTCCATCAATGGCACTGGGCACAGAAACCAAAGTTCCTCCTCTCCTGGCTGGACCTCCCC
GGGGCTTCTGGTCTCTGTGCAATATGGACTCCTCCTGCTCAAGGCCCTGATGCTGTCAGTTTTCTGTGTG
CTTCTTTGCTGGAGGAGTGGCCAGGGACGAGAGTACATGGCAGAGACGATGGAGCTTTCAAAACTACCTC
ACATCTCCAAGTCCTTGGACACGGTTAGCCACATCTCAGGGTATGAGAAGAAGGCTAACTGGTACTAA

Translation (255 aa):
MAWRYSQLLLVPVQLVFLASVCCPGVWGSTVSEELHRMVGQSLSVQCQYKPKEESYVLKTWCRQTAPSKC
TRVVTTSEPRKAARELQHTIWDDPEAGFFNITMTQLTEDDSAFYWCGPYYPSLREVTVLRNISLVVSPAP
STLPSQTIAPLPESTVLTTSPEETTDSSINGTGHRNQSSSSPGWTSPGLLVSVQYGLLLLKALMLSVFCV
LLCWRSGQGREYMAETMELSKLPHISKSLDTVSHISGYEKKANWY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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