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Report for CCDS52623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52623.1 Public Mus musculus 8 Orc6 23 108 98 CCDS HistoryNCBI Gene:56452Re-query CCDS DB by CCDS ID:52623.1Re-query CCDS DB by GeneID:56452See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170141.2 ENSMUSP00000126925.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170141.2Link to Ensembl Protein Viewer:ENSMUSP00000126925.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170141Re-query CCDS DB by Protein ID:ENSMUSP00000126925
Original member Current member NCBI NM_001163791.1 NP_001157263.1 Accepted alive Link to Nucleotide Sequence:NM_001163791.1Link to Protein Sequence:NP_001157263.1Re-query CCDS DB by Nucleotide ID:NM_001163791Re-query CCDS DB by Protein ID:NP_001157263Link to BLAST:NP_001157263.1

Chromosomal Locations for CCDS 52623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85302829 85302959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85303362 85303451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85305209 85305321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85306217 85306318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85307586 85307710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGTGTATCAGAGCTGTCTTAAATCTTTTGAGTGTTTACTAGGATTAAATTCAAATGTTGGAATCAGAG
ACCTAGCTGTACAGTTCAGCTGTACAGAAGCAGTGAACTTGGCTGCAGAGATACTGCAGAGCTACGAGTC
TGGTCTTCCTGAAACACAGCGAGCAGATCTTGACTTGTCCAGGCCACTTTTCACCACTGCCGCACTACTC
TCAGCATGCAAAATTCTAAAGATAAAGGTGGATAAAACCAAAATGATAACTGCATCCGGTGTGAAAAAGG
CAATACTTGATCGACTGTGTAAGCAGTTAGAAAAGATTGGGCAGCAGATTAACAGAGACTCTGCAGATTT
AGCTAGACCAGCACTGAAGAGAAAGAAGCCAGAGTTTAGTCCAACACTGAAGAAAAAGGAGCCAGGACTT
GAACCACCAGCAAAAGAAATAGAAGTAATAGAAACCCTTCATAAACTACCTAAAGATGAAGATCTGACAC
AGGATTATGAAGAATGGAAAAGGAAGATTTTGGAAAATGCTGCCAAAGCTCAGACAGCCACAGCAGAGTG
A

Translation (186 aa):
MVYQSCLKSFECLLGLNSNVGIRDLAVQFSCTEAVNLAAEILQSYESGLPETQRADLDLSRPLFTTAALL
SACKILKIKVDKTKMITASGVKKAILDRLCKQLEKIGQQINRDSADLARPALKRKKPEFSPTLKKKEPGL
EPPAKEIEVIETLHKLPKDEDLTQDYEEWKRKILENAAKAQTATAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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