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Report for CCDS50158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50158.1 Public Mus musculus 17 Vav1 23 108 98 CCDS HistoryNCBI Gene:22324Re-query CCDS DB by CCDS ID:50158.1Re-query CCDS DB by GeneID:22324See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169220.8 ENSMUSP00000126694.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169220.8Link to Ensembl Protein Viewer:ENSMUSP00000126694.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169220Re-query CCDS DB by Protein ID:ENSMUSP00000126694
Original member Current member NCBI NM_001163815.1 NP_001157287.1 Accepted alive Link to Nucleotide Sequence:NM_001163815.1Link to Protein Sequence:NP_001157287.1Re-query CCDS DB by Nucleotide ID:NM_001163815Re-query CCDS DB by Protein ID:NP_001157287Link to BLAST:NP_001157287.1

Chromosomal Locations for CCDS 50158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57279198 57279284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57279357 57279401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57295982 57296098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57296552 57296610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57296700 57296768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57297049 57297157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57297246 57297341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57298772 57298840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57299101 57299204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57299842 57299941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57301181 57301276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57301861 57301929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57302074 57302160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57302265 57302350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57303015 57303147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57303834 57303943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57304824 57304925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57305280 57305377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57305459 57305481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57305663 57305708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57306107 57306243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57307034 57307099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57309452 57309483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57311784 57311900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57315244 57315331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57318628 57318742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57324642 57324793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57327651 57327704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2466 nt):
ATGGAGCTCTGGCGACAGTGCACCCACTGGCTGATCCAGTGTCGGGTGCTGCCTCCCAGCCACCGTGTGA
CCTGGGAGGGGGCCCAGGCCATTAATCTTCGCGAGGTTAACTTGCGGCCCCAGATGTCCCAGTTCCTTTG
TCTTAAGAACATTCGAACCTTCCTGTCTACTTGCTGTGAGAAGTTCGGCCTCAAGCGCAGTGAACTCTTT
GAGGCTTTTGACCTCTTCGATGTGCAGGACTTTGGAAAGGTCATCTACACCCTGTCTGCTCTGTCATGGA
CACCCATTGCCCAGAACAAAGGAATCATGCCCTTCCCAACAGAGGACAGCGCTCTGAACGACGAAGATAT
TTACAGTGGCCTTTCAGACCAGATTGATGACACCGCAGAGGAAGACGAGGACCTTTATGACTGCGTGGAA
AATGAGGAGGCAGAGGGGGACGAGATCTACGAGGACCTAATGCGCTTGGAGTCGGTGCCTACGCCACCCA
AGATGACAGAGTATGATAAGCGCTGCTGCTGCCTGCGGGAGATCCAGCAGACGGAGGAGAAGTATACAGA
CACACTGGGCTCCATCCAGCAGCACTTCATGAAGCCTCTGCAGCGATTCCTTAAGCCTCAAGACATGGAG
ACCATCTTTGTCAACATTGAGGAGCTGTTCTCTGTGCATACCCACTTCTTAAAGGAACTGAAGGATGCCC
TGGCTGGCCCGGGAGCAACAACACTGTATCAGGTCTTCATCAAGTACAAGGAGAGGTTCCTGGTTTATGG
CCGTTATTGCAGTCAGGTGGAGTCAGCCAGCAAGCACTTGGATCAAGTGGCCACAGCACGGGAGGATGTG
CAGATGAAGCTGGAGGAATGTTCTCAAAGAGCTAACAATGGCCGATTCACCCTACGGGATCTGCTGATGG
TACCTATGCAGCGGGTGCTGAAGTACCACCTCCTTCTCCAGGAGCTAGTGAAACACACACAGGATGCTAC
AGAGAAGGAGAACCTGCGGTTGGCCCTGGACGCCATGAGGGACCTGGCACAGTGCGTGAACGAGGTCAAG
AGGGACAATGAAACCCTACGGCAGATCACAAACTTTCAGCTGTCCATTGAGAACCTGGACCAGTCTCTGG
CTAACTATGGCCGGCCCAAGATTGACGGTGAGCTCAAGATTACCTCAGTGGAGCGTCGCTCAAAGACAGA
CAGGTATGCCTTCCTGCTGGACAAAGCACTGCTCATCTGTAAACGCCGCGGGGACTCTTACGACCTCAAA
GCCTCGGTGAACTTGCACAGCTTCCAAGTTCGAGATGACTCCTCCGGGGAGCGAGACAACAAGAAGTGGA
GCCATATGTTCCTTCTGATTGAGGATCAAGGCGCCCAGGGCTATGAGCTGTTCTTCAAGACTCGGGAGCT
GAAGAAGAAGTGGATGGAACAGTTCGAAATGGCCATCTCCAACATTTACCCAGAGAATGCTACAGCCAAT
GGGCATGATTTTCAGATGTTCTCCTTTGAGGAGACCACTTCCTGCAAGGCCTGCCAGATGTTACTCAGAG
GCACATTCTACCAGGGATATCGCTGTTACAGGTGCCGGGCACCTGCACACAAGGAGTGTCTGGGGAGAGT
GCCTCCCTGTGGTCGCCATGGGCAAGATTTCGCAGGAACCATGAAGAAGGACAAGCTCCATCGAAGGGCC
CAGGACAAGAAAAGGAATGAATTGGGTCTGCCTAAGATGGAAGTGTTTCAGGAATACTATGGGATCCCTC
CTCCACCTGGAGCCTTTGGGCCATTTTTACGGCTCAACCCTGGGGACATTGTGGAGCTCACTAAGGCAGA
GGCTGAGCACAACTGGTGGGAGGGAAGGAATACTGCTACAAATGAAGTCGGCTGGTTTCCCTGTAACAGA
GTGCATCCCTATGTCCACGGCCCTCCTCAGGACCTGTCTGTGCATCTCTGGTATGCGGGCCCTATGGAAC
GAGCAGGCGCTGAGGGCATCCTCACCAACCGTTCTGATGGGACCTATCTGGTGCGGCAGAGGGTGAAAGA
TACAGCGGAGTTCGCCATCAGCATTAAGTATAACGTGGAGGTCAAGCATATTAAAATCATGACGTCAGAG
GGGTTGTACCGGATCACAGAGAAGAAGGCTTTCCGGGGCCTTCTGGAACTGGTAGAGTTTTATCAGCAGA
ATTCCCTCAAAGATTGCTTCAAGTCGTTGGACACCACCTTGCAGTTTCCTTATAAGGAACCTGAGAGGAG
AGCCATCAGCAAGCCACCAGCTGGAAGCACCAAGTATTTTGGCACTGCCAAAGCCCGCTACGACTTCTGT
GCCCGGGACAGGTCGGAACTGTCCCTTAAGGAGGGTGATATCATCAAGATCCTCAATAAGAAGGGACAGC
AAGGCTGGTGGCGTGGGGAGATCTACGGCCGGATCGGCTGGTTCCCTTCTAACTATGTGGAGGAAGACTA
TTCCGAATATTGCTGA

Translation (821 aa):
MELWRQCTHWLIQCRVLPPSHRVTWEGAQAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELF
EAFDLFDVQDFGKVIYTLSALSWTPIAQNKGIMPFPTEDSALNDEDIYSGLSDQIDDTAEEDEDLYDCVE
NEEAEGDEIYEDLMRLESVPTPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQRFLKPQDME
TIFVNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDV
QMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQDATEKENLRLALDAMRDLAQCVNEVK
RDNETLRQITNFQLSIENLDQSLANYGRPKIDGELKITSVERRSKTDRYAFLLDKALLICKRRGDSYDLK
ASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATAN
GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPCGRHGQDFAGTMKKDKLHRRA
QDKKRNELGLPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNR
VHPYVHGPPQDLSVHLWYAGPMERAGAEGILTNRSDGTYLVRQRVKDTAEFAISIKYNVEVKHIKIMTSE
GLYRITEKKAFRGLLELVEFYQQNSLKDCFKSLDTTLQFPYKEPERRAISKPPAGSTKYFGTAKARYDFC
ARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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